Mesoscopic microscopy for ultra-high speed and large-scale volumetric brain imaging
Project Number5R01EB034272-02
Contact PI/Project LeaderYI, JI
Awardee OrganizationJOHNS HOPKINS UNIVERSITY
Description
Abstract Text
PROJECT SUMMARY
The brain is built on billions of neural connections in a highly organized 3D hierarchy. At the same time, neural
activity is highly dynamics that requires kilohertz imaging rate to capture action potentials and sub-threshold
voltage signals, the fundamental bit for neural communication. While the recent advent of genetically encoded
voltage indicators (GEVIs) makes it possible to optically record the neural membrane voltage, the technical
challenges are profound in imaging millimeter-scale volumetric voltage imaging at kilohertz with cellular
resolution. In this proposal, we aim to address the challenges by developing a one-photon mesoscopic (i.e.
millimeter scale field of view, FOV) volumetric voltage imaging, using mesoscopic oblique plane microscopy
(Meso-OPM). Our technique will image >1.8 mm2 FOV, >0.1 mm depth penetration at 1 KHz, capable of
recording voltage signals across an entire nervous system of a Zebrafish larva. The bright and stable GEVIs
Voltron with JF525 dye will be used in our proposed work. Meso-OPM is a variant of light sheet microscopy
(LSM), with a single primary objective lens instead of two in conventional LSM. The simplified optical design
allows 1) leveraging high photon efficiency in LSM; 2) integrating ultra-fast passive optical scanning to achieve >1
MHz frame rate; and 3) flexible optical designs for millimeter FOV and cellular resolution. In addition to the
technical challenges for large-scale ultrafast 3D imaging, the effective data processing pipeline for massive data
is also highly desirable. To this end, we propose a robust and efficient deep learning framework to perform self-
supervised 4D denoising and neuron segmentation. The pipeline enable massive data processing at 10 volume
per second for the downstream neuroscience studies. Finally, to demonstrate the utility of proposed techniques,
we will image Zebrafish in response to optic flow by a drifting grating visual stimuli. We will identify neural circuitry
responsible to the motion compensation to the optic flow (i.e. maintaining body position when presented drifting
grating) from eyes all the way to spinal cord. Altogether, this proposal will greatly improve our capability of
dissecting large-scale neural circuitry, and the sub-sequent modeling and creation of artificial neural circuits.
Public Health Relevance Statement
NARRATIVE
Large-scale volumetric voltage imaging is a powerful method in understanding brain function, yet posts profound
technical challenges. We propose a mesoscopic oblique plane microscopy (Meso-OPM) to address the
challenges and achieve >1.8 mm2 field-of-view, >0.1 mm depth penetration, and 1 KHz volume rate in imaging
Voltron voltage indicators. We will test our technique in Zebra fish larvae, for the first time, offering recording
across the whole nervous system to dissecting neural circuitry responsible for motor behaviors.
National Institute of Biomedical Imaging and Bioengineering
CFDA Code
286
DUNS Number
001910777
UEI
FTMTDMBR29C7
Project Start Date
01-April-2023
Project End Date
31-March-2027
Budget Start Date
01-April-2024
Budget End Date
31-March-2025
Project Funding Information for 2024
Total Funding
$451,471
Direct Costs
$317,654
Indirect Costs
$133,817
Year
Funding IC
FY Total Cost by IC
2024
National Institute of Biomedical Imaging and Bioengineering
$451,471
Year
Funding IC
FY Total Cost by IC
Sub Projects
No Sub Projects information available for 5R01EB034272-02
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