An in integrated platform for multiomic analyses of pathogen and host data using scalable public infrastructure
Project Number1U24AI183870-01
Contact PI/Project LeaderNEKRUTENKO, ANTON Other PIs
Awardee OrganizationPENNSYLVANIA STATE UNIVERSITY, THE
Description
Abstract Text
Project Summary
Data is the primary currency for all domains of today's biomedical research. However, data does not have
some of the properties of a good currency: durability, portability, uniformity, convertibility, and acceptability. It is
vast, heterogeneous, geographically distributed, and often protected by access control mechanisms. It requires
hardware and software complex machinery to process. Skills needed for data interpretation are sparse across
the entire biomedical domain. How does one make such a currency universally beneficial to all infectious
disease researchers who study different organisms with disparate goals, motivations, and expertise? This
brings us directly to the main point of this proposal: to implement a common data analysis
medium—BRC.analytics—that would connect infectious disease researchers to data, tools, and workflows.
The transformative tenets of the proposed system are: (1) giving access to an ensemble of data resources via
a single workspace where data can be stored, combined, and analyzed; (2) enabling access to the majority of
high quality open source tools and allow creation of complex workflows in the workspace; (3) ensuring that
workspace in powered by powerful hardware capable of sustaining thousands of users analyzing large
datasets; (4) providing several modes of access including a graphical user interface (GUI) as well as an
Application Programming Interface (API). BRC.analytics is a unique knowledgebase that provides data, tools,
and infrastructure as well as the know-how” on how to apply this power effectively.
Public Health Relevance Statement
Project Narrative
We propose to develop a common data analysis medium—BRC.analytics—that would connect infectious
disease researchers to data, tools, and workflows. The transformative tenets of the proposed system are: (1)
giving access to an ensemble of data resources via a single workspace where data can be stored, combined,
and analyzed; (2) enabling access to the majority of high quality open source tools and allow creation of
complex workflows in the workspace; (3) ensuring that workspace in powered by powerful hardware capable of
sustaining thousands of users analyzing large datasets; (4) providing several modes of access including a
graphical user interface (GUI) as well as an Application Programming Interface (API). BRC.analytics will be a
new type of knowledgebase that provides data, tools, and infrastructure as well as the “know-how” on applying
this power effectively.
National Institute of Allergy and Infectious Diseases
CFDA Code
855
DUNS Number
003403953
UEI
NPM2J7MSCF61
Project Start Date
18-July-2024
Project End Date
30-June-2029
Budget Start Date
18-July-2024
Budget End Date
30-June-2025
Project Funding Information for 2024
Total Funding
$3,275,000
Direct Costs
$2,872,005
Indirect Costs
$402,995
Year
Funding IC
FY Total Cost by IC
2024
National Institute of Allergy and Infectious Diseases
$3,275,000
Year
Funding IC
FY Total Cost by IC
Sub Projects
No Sub Projects information available for 1U24AI183870-01
Publications
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Outcomes
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Clinical Studies
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History
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