Project Summary/Abstract
Our overarching goal is to aid anal cancer screening using a new, non-invasive imaging approach termed
probe-based light sheet microscopy (pLSM).
Incidence and mortality of anal cancer have been rapidly increasing: mortality increased by 5.7% per year
between 2014 and 2020. The recent ANCHOR (Anal Cancer HSIL Outcomes Research) trial published in late
2022 showed that treatment of anal precancer (high-grade squamous intraepithelial lesion, HSIL) significantly
reduces the risk of anal cancer. Therefore, it is expected that anal cancer screening in high-risk populations will
become standard of care. However, high-resolution anoscopy, an integral component of anal cancer screening
and treatment, has low-to-moderate diagnostic performance, and trained anoscopists are scarce due to a
steep learning curve and no standardized training opportunities.
In a recent Trailblazer R21 project, we developed a new optical microscopy approach termed scattering-based
light sheet microscope (sLSM). While LSM is not new and has been widely used for imaging fluorescence-
labelled samples in biology research, we optimized LSM for imaging animal and human tissues using the
intrinsic scattering contrast for clinical applications. In our preliminary study, we imaged fresh anal biopsies (n
= 110) ex vivo with a bench sLSM device and found that i) sLSM could clearly visualize the critical morphologic
features pathologists use to diagnose anal squamous intraepithelial lesions and ii) could provide high
diagnostic accuracy (overall accuracy = 87%; HSIL accuracy = 91%).
In this 4-year R01 project, we will develop a new, probe-based light sheet microscopy (pLSM) device and
evaluate its clinical utility for imaging human subjects in vivo. During anal cancer screening, the anoscopist
directly places the pLSM device on the anal mucosa and examines the cellular details of the tissue. The pLSM
images are analyzed by a trained clinician (pathologist or anoscopist) or by automated image analysis
algorithms. The pLSM image findings guide the clinician to areas concerning for HSIL, which can increase the
screening sensitivity and reduce the morbidity caused by unnecessary biopsy of benign and low-grade
squamous intraepithelial lesions (LSILs). Additional unique benefits of pLSM are: i) providing a novel feedback
tool during high-resolution anoscopy training, ii) non-invasive monitoring of suspicious lesions over time, and
iii) enabling same-day treatment for patients at a greater risk of being lost to follow up. The specific aims of this
project are to Develop a pLSM device (Aim 1), Evaluate the clinical utility of pLSM in an in vivo human imaging
study (Aim 2), and Develop automated image analysis algorithms (Aim 3).
We are a multi-institute, interdisciplinary research team who has been collaborating successfully for over 4
years. We bring together expertise in optical engineering (University of Arizona, Memorial Sloan Kettering),
anal cancer and pathology (Stanford), and image data analysis (UA, MSK).
Public Health Relevance Statement
Project Narrative
We aim to significantly improve anal cancer screening, using a novel imaging tool termed probe-based light
sheet microscope (pLSM). The pLSM device non-invasively examines cellular details of anal tissues, which
can be used to provide high accuracy for diagnosing anal lesions. The pLSM image findings can guide the
clinician to areas concerning for precancer, which can increase the screening sensitivity and reduce the
morbidity caused by unnecessary biopsy of benign and low-grade squamous intraepithelial lesions.
NIH Spending Category
No NIH Spending Category available.
Project Terms
Algorithmic AnalysisAlgorithmsAnusAreaArizonaBenignBiologyBiopsyCategoriesClassificationClinicalCollaborationsConsultationsDataData AnalysesDevelopmentDevicesDiagnosisDiagnosticDiameterDiseaseEngineeringEpithelial CellsFeedbackForcepGoalsImageImaging DeviceIncidenceInterdisciplinary StudyLabelLateralLearningLesionLightMalignant neoplasm of anusMeasuresMicroscopeMicroscopyMorbidity - disease rateMorphologyMucous MembraneNational Institute of Biomedical Imaging and BioengineeringNuclearOpticsOutcomes ResearchPathologistPathologyPatientsPerformancePlayPublishingResearchResolutionResource-limited settingRiskRisk ReductionRoleSamplingScreening for cancerSensitivity and SpecificitySpecificitySquamous intraepithelial lesionStandardizationTestingTimeTissuesTrainingUniversitiesVisualVisualizationanimal imaginganimal tissueautomated algorithmautomated image analysiscervical cancer preventionclinical applicationdeep learningdiagnostic accuracydiagnostic toolfeature extractionfluorescence imagingfollow-uphead-to-head comparisonhigh risk populationhuman imaginghuman subjecthuman tissueimaging approachimaging studyimprovedin vivoin vivo imagingmalignant mouth neoplasmmetermicroscopic imagingmortalitynon-invasive imagingnon-invasive monitornoninvasive diagnosisnovelperformance testspremalignantprospectivescreeningscreening guidelinesstandard of caretooltraining opportunitytreatment duration
National Institute of Biomedical Imaging and Bioengineering
CFDA Code
286
DUNS Number
806345617
UEI
ED44Y3W6P7B9
Project Start Date
13-January-2025
Project End Date
31-December-2028
Budget Start Date
13-January-2025
Budget End Date
31-December-2025
Project Funding Information for 2025
Total Funding
$272,835
Direct Costs
$213,393
Indirect Costs
$59,442
Year
Funding IC
FY Total Cost by IC
2025
National Institute of Biomedical Imaging and Bioengineering
$272,835
Year
Funding IC
FY Total Cost by IC
Sub Projects
No Sub Projects information available for 1R01EB036693-01
Publications
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Outcomes
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No Outcomes available for 1R01EB036693-01
Clinical Studies
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