Development of motion correction algorithms for functional MRI data using a custom simultaneously excited multi-slice MRI acquisition with prospectively injected motion
Project Summary
Head motion and its residual artifact after motion correction are one of the most
dominant non-neuronal sources of artifact in fMRI data. Currently, the most commonly
employed fMRI motion correction algorithms assume that head motion is synchronized to the
volume acquisition. However, typical fMRI data is acquired as a stack of 2 dimensional multi-
slice EPI images, acquired at different time points throughout the volume repetition time. This
inter-volume motion assumption is not corrected by these correction techniques.
In a previous project (R03EB012968), we modified the Prospective Acquisition CorrEcted
(PACE) EPI sequence to inject intra-volume (slice-wise) motion during EPI acquisition. This
modified sequence is referred to as SIMulated PACE (SIMPACE). Using SIMPACE, we
scanned in-situ cadaver brains, free from physiologic noise or head motion and generated intra-
volume motion injected SIMPACE dataset. Using these data, we developed the SLice-Oriented
MOtion COrrection (SLOMOCO) method. SLOMOCO is the only publicly available method to
correct intra-volume motion for a conventional fMRI dataset.
The current project will extend the SLOMOCO project in order to 1) collect
simultaneously excited multi-slice (SMS) SIMPACE data with various pattern of inter-/intra-
volume head motion using ex-vivo brain phantom, 2) improve the slicewise motion correction
method and its pipeline and 3) propose intra-motion index to represent quality of (rs-)fMRI
analysis output.
The generated SMS SIMPACE data will be made available to the public. The improved
SLOMOCO software will be shared in a neuro-community. We will validate the new SLOMOCO
on HCP resting state fMRI data and present the new motion index to present quality of fMRI
data, which will be used as the motion outlier for the censoring volume or the exclusion of the
study. Successful outcome of the proposed project will provide a validated, gold-standard metric
for assessment of residual motion artifact in fMRI data.
Public Health Relevance Statement
Project Narrative
We propose to generate simultaneously excited multi-slice (SMS) SIMiulated
Prospective Acquisition CorrEcted (SIMPACE) echo planar imaging data with the various inter-
/intra-volume motion patterns using ex-vivo brain phantom. Using the gold-standard motion
corrupted data, we validate the proposed slicewise motion correction method and its motion
nuisance regressor model, which is applied to fMRI data retrospectively. Based on the finding
and utilizing the proposed method, HCP data will be tested to present a standard metric for the
assessment of quality assurance in fMRI data.
National Institute of Biomedical Imaging and Bioengineering
CFDA Code
286
DUNS Number
135781701
UEI
M5QFLTCTSQN6
Project Start Date
01-February-2025
Project End Date
31-January-2027
Budget Start Date
01-February-2025
Budget End Date
31-January-2026
Project Funding Information for 2025
Total Funding
$80,500
Direct Costs
$50,000
Indirect Costs
$30,500
Year
Funding IC
FY Total Cost by IC
2025
National Institute of Biomedical Imaging and Bioengineering
$80,500
Year
Funding IC
FY Total Cost by IC
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