BACTERIORHODOPSIN CHROMOPHORE STRUCTURE BY DEUTERIUM NMR
Project Number5R01GM053484-02
Contact PI/Project LeaderHEYN, MAARTEN P
Awardee OrganizationUNIVERSITY OF ARIZONA
Description
Abstract Text
The objective of the proposed research is to investigate by 2H-NMR the
structure of the chromophore of bacteriorhodopsin, the key component of
this light-driven proton pump. The rate of proton transfer reactions is
critically dependent on the distances and bond angles of proton donors and
acceptors. The protonated Schiff base is the source of protons in this
pump and the structural information obtained will be essential in
developing detailed models of its mechanism. The angles of each of the
bonds connecting the five methyl groups of the chromophore with the
polyene chain and beta-ionone ring will be determined with respect to the
membrane normal. These angles will be obtained with high accuracy from the
quadrupole splittings of the 2H-NMR spectra of oriented uniaxial samples
of purple membranes regenerated with the corresponding selectively
deuterated retinals. Experiments will be carried out in the dark initial
state as well as in the key photocycle intermediates M, N and O, in which
the chromophore is in a 13-cis configuration or has a deprotonated Schiff
base. The changes in angle will thus provide structural information about
curvature, twists and tilt of the chromophore in these functionally
important intermediates. External parameters (pH, ionic strength and
temperature) and mutants will allow trapping of the various intermediates.
The M intermediate is the key intermediate in the proton translocation
cycle, and particular attention will be paid to its potential role as a
reprotonation switch. Complementary spin-lattice relaxation experiments
will be performed to learn about the mobility of various parts of the
chromophore in the different intermediates. This information will be
valuable in understanding other medically important ion translocating
membrane proteins, for which much less is known about the structure.
Bacteriorhodopsin is moreover the prototype of the important family of
receptor proteins with seven transmembrane alpha-helices, which includes
the visual pigment rhodopsin. Activation of rhodopsin involves structural
changes in its M-II intermediate which originates in the chromophore and
propagate to the cytoplasmic loops. An investigation of the analogous
steps in the M intermediate of bR is expected to contribute to an
understanding of the mechanism of activation of rhodopsin in visual signal
transduction.
No Sub Projects information available for 5R01GM053484-02
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