SWAP AND SR PROTEIN REGULATION OF ALTERNAIVE SPLICING
Project Number1R55AR044676-01
Contact PI/Project LeaderLAFYATIS, ROBERT A
Awardee OrganizationBOSTON UNIVERSITY MEDICAL CAMPUS
Description
Abstract Text
Expression of many genes is regulated by alternative mRNA
splicing through the deletion, addition, or exchange of exons.
Relatively little is known regarding how genes, referred to as
splicing regulators, mediate changes in splicing during physiologic
processes such as cell activation and differentiation. This proposal
describes studies that will examine the splicing regulators involved
in alternative splicing regulation of CD45, fas and fibronectin,
three genes that have been implicated in rheumatic diseases.
Changes in the pattern of alternative splicing of CD45, which are
associated with the development of a memory cell phenotype, have
been found in patients with systemic lupus erythematosus (SLE).
An alternatively spliced form of fas, which produces a soluble
form of the encoded protein that inhibits full length fas function,
has also been associated with SLE. Altered splicing of the
fibronectin IIICS region, which encodes the binding site for the
alpha4beta1 integrin, has been described in endothelial cells from
patients with rheumatoid arthritis. The long range goals of this
project are to define the intracellular factors that define the splice
sites in these alternatively spliced genes during both physiologic
and pathologic states. In this proposal primarily physiologic
regulation of these genes will be analyzed by determining the
splicing regulators that define splice site selection of CD45 and fas
during T-cell activation and maturation, and of the fibronectin
IIICS region in hepatocytes versus fibroblasts and endothelial
cells. Two mammalian splicing regulators, SWAP, which is
homologous to the Drosophila suppressor-of-white-apricot gene,
and SF2 have been shown to regulate the alternative splicing of
CD45 and fibronectin. Both SWAP and SF2 enhance exon
skipping of CD45, but has a different effect on fibronectin exon
IIICS, SF2 enhance and SWAP inhibits exon inclusion. To
develop a more comprehensive understanding of the splicing
regulation of CD45, fas, and fibronectin, experiments to study the
effect of SWAP, SF2 and other splicing regulators of the
alternative splicing of these genes are proposed. The effects of
SWAP, SR proteins, PTB and hnRNP A1 on CD45, fas and
fibronectin will be studied by contransfection experiments. To
further implicate regulator genes in the observed patterns of
alternative splicing, mRNA levels of splicing factors will be
analyzed in cells expressing primarily one or the other of the
alternatively spliced forms. Finally, to more clearly show that a
splicing regulator is responsible for the observed regulation,
antisense experiments will be carried out to selectively inhibit
expression of each splicing regulator implicated in splicing of
CD45, fas or fibronectin.
Public Health Relevance Statement
Data not available.
NIH Spending Category
No NIH Spending Category available.
Project Terms
CD antigensRNA splicingT lymphocyteautoantigensfibronectinsgenetic regulationhuman subjectleukocyte activation /transformationmolecular site
National Institute of Arthritis and Musculoskeletal and Skin Diseases
CFDA Code
DUNS Number
604483045
UEI
FBYMGMHW4X95
Project Start Date
30-September-1997
Project End Date
29-September-1999
Budget Start Date
30-September-1997
Budget End Date
29-September-1999
Project Funding Information for 1997
Total Funding
$100,000
Direct Costs
$80,000
Indirect Costs
$20,000
Year
Funding IC
FY Total Cost by IC
1997
National Institute of Arthritis and Musculoskeletal and Skin Diseases
$50,000
1997
NIH Office of the Director
$50,000
Year
Funding IC
FY Total Cost by IC
Sub Projects
No Sub Projects information available for 1R55AR044676-01
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