BIOCHEMICAL STUDIES OF SILICEOUS SKELETAL FORMATION
Project Number5R01GM008229-28
Contact PI/Project LeaderVOLCANI, BENJAMIN E
Awardee OrganizationUNIVERSITY OF CALIFORNIA, SAN DIEGO
Description
Abstract Text
It is now known that silicon (Si) is an essential trace element in
animals for the formation of bone, cartilage, and connective
tissue; it participates in female hormonal balance (in rats) and is a
pathogenic agent in fibrotic lung diseases and cancers. It is
interrelated with calcium and hormones in atherosclerosis and
aging, and with aluminum in Alzheimer's disease. Though Si is
clearly implicated in a variety of health-related questions,
relatively little is known of its mode of action in mammals, due in
part to inherent methodological difficulties. Many of these
obstacles can be avoided by using the diatom as an experimental
system, due to this organism's absolute dependence in Si. In the
diatom, Si is required not only for cell wall formatin, but also for
DNA synthesis and for net synthesis of cAMP. Si induces a
number of mRNAs and proteins, including two nuclear DNA
polymerases and thymidylate kinase, whose appearance coincides
with DNA synthesis. Si may thus be a major regulator of diatom
proliferation at the level of gene expression. The long term
objective of our research is to understand how Si affects cellular
metabolism in the diatom and other organisms; in particular
whether it regulates gene expression through direct interaction
with a regulatory molecule or indirectly by altering cellular
metabolism. The specific goal of the proposed research is to
characterize gene sequences which are responsive, either through
direct or indirect effects, to Si. This will be accomplished in
three studies, using Cylindrotheca fusiformis. In Study I, -
"Determination of the Si-responsive Regulatory Point in Gene
Expression" - (1) cDNA libraries representing the distinctive
mRNA populations from Si-starved and Si-replenished diatoms
will be screened to identify cDNA clones derived from genes with
Si-responsive mRNAs; (2) cDNA clones will be identified from
particualr genes whose gene products, thymidylate kinase and
nuclear DNA polymerases, are Si-responsive; (3) these cDNAs will
be sequenced; and (4) hybridization probes derived from these
clones will be used to determine the points in gene expression and
the point(s) in the cell cycle at which Si-responsive genes are
regulated. In Study II, -"Development of a Diatom
Transformation System" - a transformation system will be
developed to re-introduce Si-responsive genes into the diatom.
Based on the foundation laid in Studies I and II, in Study III -
"Determination of Diatom Si-responsive Regulatory Sequences" -
specific Si-responsive regulatory sequences within Si-responsive
genes will be identified, by fusing putative regulatory sequences
appropriately to an assayable marker gene, transforming diatoms
with these fusions, and determining the response of the marker
gene to Si. The isolation of such sequences is an essential step in
elucidating the mechanism(s) involved in Si regulation of gene
expression and cell proliferation. In view of Si's importance both
as a metabolite and as a pathogen, a contribution to understanding
its mode of action at the molecular level is most germane to
health related research.
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