MOLECULAR INTERACTION IN T4 DNA REPLICATION COMPLEX
Project Number5R01GM029158-08
Contact PI/Project LeaderVON HIPPEL, PETER HANS
Awardee OrganizationUNIVERSITY OF OREGON
Description
Abstract Text
In this proposal we outline the next stages of a continuing physical
biochemical study of the structural and functional interactions of the
protein and nucleic acid components of the bacteriophage T4 DNA replication
system. Building on the results of Alberts and Nossal and their coworkers,
who have defined this in vitro system, as well as on our own earlier
studies, we will continue to focus on a step-wise "building-up" of the
complex to gain further insight into the functional role of each component
in the integrated system. To this end we plan to continue to use our newly
developed UV laser cross-linking methodology to determine contacts (and
affinities) between the various proteins of the system and the DNA of the
primer-template junction, as well as the DNA strand displaced by the
advancing replication fork in asymmetric (leading-strand-only) DNA
synthesis. We will also continue to study the assembly and molecular
activities of functional subsets of the replication system, using enzymatic
and physical chemical "probes". These subsets include the DNA polymerase
(gene 43 protein) itself, the polymerase accessory-helicase complex (genes
44/62 + 45 proteins) and the lagging strand primase-helicase complex (genes
41 and 61 protein), each of which also interacts with the T4 single-strand
DNA binding (gene 32) protein. We will also continue to study the
processivity of the polymerase as a measure of the functional integration
of the various components of the system (working both "forward" in DNA
synthesis and "backward" as an exonuclease "editor" of the growing primer
strand), and plan to use this approach to begin to study the issue of the
fidelity of DNA synthesis as well. We hope that these studies will help to
provide at least a partial molecular understanding of the various sets of
protein-protein and protein-nucleic acid interactions that control the
function of this DNA elongation complex, and of how these interactions work
together to form a coupled system that conduct leading- and lagging-strand
DNA synthesis at physiological rates and with physiological fidelities.
No Sub Projects information available for 5R01GM029158-08
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