FUNCTIONAL LABELING OF CYTOCHROME C BY H EXCHANGE & NMR
Project Number5R01GM031847-04
Contact PI/Project LeaderENGLANDER, S. WALTER
Awardee OrganizationUNIVERSITY OF PENNSYLVANIA
Description
Abstract Text
It is generally recognized that the H-exchange behavior of the amide NH of
a protein can yield information about structure, structure change, and
structural dynamics all through the protein, but this capability has not
yet been achieved. We have developed differential H-exchange methods that
can label just those parts of any protein that participate in any
interaction (allosteric change, small or large molecule binding, etc.).
Recent advances in NMR now make it probable that one will be able to
recognize many of the amide NH resonances in a protein like cytochrome c,
and measure their individual exchange rates. The coupling of the HX and
NMR capabilities would provide a most powerful tool for protein chemical
studies. We propose to begin to develop this capability. The selective
labelling methods will be used, with samples of fully ND-exchanged protein,
to put H on just those segments of cytochrome c that act to adjust the
redox potential of the heme, or that interact with the oxidase, or the
reductase, etc. Then we will attempt to identify the sensitive
(protonated) resonances using 2D NMR techniques supplemented by our
selective tritium-labelling and peptide HPLC separation methods.
We further suspect that measurement of the H-exchange rates of restricted
sets of NH like these will distinguish between alternative models for the
internal dynamical motions suggested to determine protein H-exchange
processes. If the local unfolding model is confirmed, as now seems likely
(at least for a-helices), then experiments like these will also be able to
quantify the contribution of individual segments to protein function in
terms of free energy. We hope to check this capability by comparing redox
sensitive H-exchange changes in related cytochromes having differing redox
potentials.
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