INITIATION OF BACTERIOPHAGE DNA REPLICATION IN VITRO
Project Number2R01GM032253-09
Contact PI/Project LeaderMCMACKEN, ROGER
Awardee OrganizationJOHNS HOPKINS UNIVERSITY
Description
Abstract Text
We propose to continue our studies of the initiation of bacterlophage
lambda DNA replication in a system that is reconstituted with highly
purified lambda0 and E. coli proteins. Our long range goal is to
achieve a detailed mechanistic understanding of the biochemical events
that occur in the initiation, propagation and regulation of lambda DNA
replication.
We will perform mechanistic studies of a ten protein system that
specifically initiates DNA replication at a lambda replication origin
(ori lambda) present on a superconed plasmid template. We will attempt
to establish bidirectional replication in this system. We will conduct
high-resolution supercoil footprinting analysis of the various
nucleoprotein prepriming structures that are formed at ori lambda prior
to the initiation of localized DNA unwinding, priming and DNA chain
synthesis. The effect of template superhelicity on the efficiency of
initiation of lambda replication will be determined. We will examine
how E. coli HU protein, a strong inhibitor of lambda DNA replication,
blocks the initiation process. The molecular mechanisms involved in the
transcriptional activation of lambda DNA replication will be thoroughly
explored. We will mutagenize the A/T-rich region of ori lambda and
select for origin defective mutants to determine which nucleotide
residues play a critical role in the initiation of chromosomal DNA
replication. We will continue our studies of the propagation of lambda
replication forks on rolling-cycle DNA templates. In particular, we
will investigate how highly processive replication forks deal with
stable nucleoprotein structures that they encounter during their rapid
movement along the chromosome. We will use immunoelectron microscopy to
determine which replication proteins are directly associated with the
replication fork on a rollingcycle template.
Much of our efforts during the next project period will be devoted to
studies of the lambda O initiator protein. These studies will include
(a) a determination of the binding constant for interaction of O with
its recognition site; (b) quantitative analysis of the individual-site
binding isotherms for O binding to ori lambda, using footprinting and
isothermal titration calorimetry; (c) formation and analysis of
cocrystals of O protein with its DNA binding site; (d) isolation and
characterization of DNA-binding mutants in O protein; (e) isolation and
characterization of mutants in the O protein recognition site; and (f)
purification and characterization of the carboxy-terminal domain of O
protein.
Biochemical studies of lambda DNA replication have provided and will
undoubtedly continue to provlde important insights into the biological
mechanisms used in the initiation and regulation of chromosomal DNA
replication. This knowledge, furthermore, provides important guidelines
for studies of these processes in more complex eukaryotic systems.
No Sub Projects information available for 2R01GM032253-09
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