PROKARYOTIC CHROMATIN AND TRANSCRIPTIONAL REGULATION
Project Number5R01GM039418-03
Contact PI/Project LeaderGEIDUSCHEK, ERNEST PETER
Awardee OrganizationUNIVERSITY OF CALIFORNIA, SAN DIEGO
Description
Abstract Text
The proposed research program is in the general area of mechanisms
for regulating the activity of genes. Its broad and practical
implications are for understanding gene regulation in developing
systems and infectious processes, and for precise interventions
concerning gene activity.
The particular system involves a bacterial virus, whose development
is determined by a programmed sequence of gene expression. The
virus codes for a chromatin-forming protein, called TF1, which is
a homologue of the ubiquitous bacterial chromatin-forming proteins,
called HU or type 11 DNA-binding proteins. The proposed research
program pursues two lines of work. The first group of studies
deals with the genetics, function, structure and DNA binding
properties of TF1, by: 1) generating temperature-sensitive TF1 by
mutagenesis targeting the entire TF1 gene, selectively; 2)
analyzing defects of viral development, caused by the failure of
TF1 function, at the molecular level; 3) analyzing structure-
function relationships in TF1 by generating mutant TF1 with
specific, appropriately chosen changes of amino acid sequence and
analyzing the consequences of these changes for the affinity and
specificity of DNA binding; 4) engaging in collaborations,
involving X-ray crystallography and NMR spectroscopy, to determine
the 3-dimensional structure of TF1 and of TF1-DNA complexes. A
second group of in vivo and in vitro studies deals with the
mechanism of selectively shutting off transcription at some, but
not all, SP01 middle promoters by: 1) mapping and sequencing middle
promoters of each regulatory subtype, seeking to detect distinctive
conserved sequences that may correlate with one regulatory class
or another: 2) utilizing the ability to clone in phage SP01 for
analyzing promoter strength and regulation in vivo by molecular
genetic methods; 3) analyzing overlapping late/middle specificity
transcription initiation with appropriate in vitro systems and
precise 5'-end mapping; 4) analyzing the occupancy of promoters by
proteins in vivo; 5) examining effects of topoisomerase inhibitors
on regulation at specific middle and late promoters; 6) examining
the effect of DNA supercoiling on in vitro transcription at
selected middle and late promoters; 7) analyzing the properties of
virus-coded RNA polymerase-binding proteins in suitable in vitro
systems. Two subsidiary projects are also proposed: one concerns
hybrid TF1 molecules, and the other concerns gene expression at a
viral gene regulation-specific promoter on a resident plasmid.
Public Health Relevance Statement
Data not available.
NIH Spending Category
No NIH Spending Category available.
Project Terms
DNA binding proteinDNA directed RNA polymeraseDNA replicationbacterial viruschromatingene expressiongenetic manipulationgenetic transcriptionnuclear magnetic resonance spectroscopynucleic acid sequenceprokaryotetemperature sensitive mutantvirus assemblyvirus geneticsvirus protein
No Sub Projects information available for 5R01GM039418-03
Publications
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Clinical Studies
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