THEORETICAL AND EXPERIMENTAL STUDIES OF COMPLEXATION
Project Number1R01GM044525-01
Contact PI/Project LeaderSTILL, WILLIAM C
Awardee OrganizationCOLUMBIA UNIV NEW YORK MORNINGSIDE
Description
Abstract Text
The objective of this proposal is the development of methods by which free
energies of association of medicinal agents and biological molecules in
water can be calculated. Having such methods will provide significantly
improved procedures by which new medicinal agents can be designed. Central
to the calculation of association free energies is the calculation of
solvation energies in water. We will develop a continuum model for water
which will provide estimates of solvation free energies rapidly and
analytically. This model will provide a potential of mean force for the
aqueous environment and be implemented as a standard energy term in a
molecular mechanics force field. We will use the solvation model in a
molecular dynamics-based full free energy simulation to evaluate enthalpies
and entropies (and thus free energies) of association. Our initial
calculations will be carried out on the antibiotic ristocetin which binds
intermediates in bacterial cell wall biosynthesis. Experimental work will
include measurements of solvation free energies for both small and large
molecules, synthesis of conformationally restricted host molecules, and
measurement of binding constants in water as tests of the theoretical
methods to be developed. In connection with our studies of conformationally
restricted molecules, we will develop a sequential constraint Monte Carlo
conformational searching method which will be applicable to polymacrocycles
and large, flexible molecules having many nOe-constrained internuclear
distances.
Public Health Relevance Statement
Data not available.
NIH Spending Category
No NIH Spending Category available.
Project Terms
chemical associationchemical bindingchemical reactiondrug /agentmolecular dynamicsthermodynamicswater
No Sub Projects information available for 1R01GM044525-01
Publications
Publications are associated with projects, but cannot be identified with any particular year of the project or fiscal year of funding. This is due to the continuous and cumulative nature of knowledge generation across the life of a project and the sometimes long and variable publishing timeline. Similarly, for multi-component projects, publications are associated with the parent core project and not with individual sub-projects.
No Publications available for 1R01GM044525-01
Patents
No Patents information available for 1R01GM044525-01
Outcomes
The Project Outcomes shown here are displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed are those of the PI and do not necessarily reflect the views of the National Institutes of Health. NIH has not endorsed the content below.
No Outcomes available for 1R01GM044525-01
Clinical Studies
No Clinical Studies information available for 1R01GM044525-01
News and More
Related News Releases
No news release information available for 1R01GM044525-01
History
No Historical information available for 1R01GM044525-01
Similar Projects
No Similar Projects information available for 1R01GM044525-01