Our work is focussed on determining the pathway and understanding
the mechanism of protein folding. We are engaged in two main
projects. The first is determination of the kinetic pathway of
folding of ribonuclease A. There are at least 3 forms of the
unfolded protein, caused perhaps by the cis-trans isomerization of
proline residues after unfolding, and we study the refolding
pathway of the major slow-folding form. In previous work we have
shown that structural intermediates are well-populated transiently
during folding at 0 degree 10 degrees C, and that numerous peptide
NH protons are protected against exchange with H2O before the
tertiary structure is formed. By a D20 trapping method, followed
by 2D 1H-NMR after folding is complete, we are determining the
structural locations of the protected peptide NH protons. In
future work we will use pulse exchange experiments to measure the
degree of protection of each protected proton as a function of time
during folding.
The second main project is to find out if apomyoglobin is a
suitable system for testing the framework model of folding and to
investigate the role of the helix:helix pairing sites during
folding. Privalov has found a prominent equilibrium intermediate
in the folding of sperm whale apomyoglobin, whose properties
resemble the so-called "molten globule state". We find that human
apomyoglobin does not show this intermediate although dog and horse
myoglobin do show it, and we propose to use site-directed
mutagenesis to find out which amino acid residues are responsible.
We will also use the "medium-resolution method" of Rosa and
Richards (1979) to find out which alpha-helices are present as
judged by protected peptide NH protons.
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