Awardee OrganizationUT SOUTHWESTERN MEDICAL CENTER
Description
Abstract Text
This project involves the development of mathematical models to
estimate the flux through different pathways using isotopomer analysis
and 13C NMR data. Three programs are under development: tcaSIM, a
simulation of the citric acid cycle and related pathways which
generates 13C isotopomer data for use in the design of experiments;
tcaCALC, a model which estimates relative pathway fluxes from NMR
spectra obtained at metabolic and isotopic steady state; and tcaFLUX,
a kinetic analysis of the citric acid cycle which allows measurement
of absolute flux from systems at metabolic, but not isotopic, steady
state. There has been much progress in the development of the kinetic
analysis. It has been applied to multiplet data and fractional
enrichment data collected from intact hearts and after
freeze-clamping. A number of different substrate groups were
examined. The model can be used to estimate citric acid cycle
activity, the exchange between citric acid cycle intermediates and
amino acids (which will include transportation between different
cellular compartments), the contribution of labeled substrate to
acetyl-CoA, and anaplerosis. The citric acid cycle rate determined by
the model was used to estimate oxygen consumption; the values obtained
were similar to those measured directly. It has been found that the
use of multiplet data along with standard fractional carbon
enrichments in this analysis is beneficial, reducing the correlation
between parameters that otherwise exists. There has also been success
with the application of data available from GCMS to isotopomer
analysis. A Finnegan GCQ bench-top GCMS with tandem mass spectrometry
capability is in use. This allows the investigator to acquire, in
addition to standard full-scan mass spectra, mass spectra of parent
ions which have been fragmented after inducing collisions with the
carrier gas. The mass spectra of these fragments give additional
information on the isotopomers present in the metabolite mixture.
Using the methyl-8 derivative of glutamate isolated from hearts
perfused under a variety of conditions, such data was analyzed in a
similar fashion to NMR multiplet data to determine substrate
utilization and anaplerosis. The results were very similar to those
obtained using NMR data, indicating that this technique will be useful
as a more-sensitive, complementary approach to NMR. (Core 3) REPORT
PERIOD: (09/01/97-08/31/98)
Public Health Relevance Statement
Data not available.
NIH Spending Category
No NIH Spending Category available.
Project Terms
Mammaliaanimal tissuebiomedical resourcecardiovascular systemcomputershuman tissuelivernuclear magnetic resonance spectroscopystatistics /biometrytechnology /technique
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Publications
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