MECHANISM-BASED DRUG SELECTION AND DESIGN: NUCLEOTIDE SA
Project Number5R01AI046416-02
Contact PI/Project LeaderULLMAN, BUDDY
Awardee OrganizationOREGON HEALTH & SCIENCE UNIVERSITY
Description
Abstract Text
DESCRIPTION (adapted from the application): This R01 application was
submitted in response to PA AI-98-100, "National Cooperative Drug Discovery
Groups-Opportunistic Infections" (NCDDG-OI) by a group of investigators from
the Oregon Health Sciences University, the University of Pennsylvania, and the
Yale University School of Medicine. It represents the continuation of a
long-term formal collaboration among the investigators of these three
institutions, supported since 1991 with a grant under the auspices of the
National Cooperative Drug Discovery Group (NCDDG). The major scientific
objective of the proposed studies is to integrate genetic, biochemical, and
structural studies on key transporters and enzymes of the pyrimidine and
purine salvage pathways in Toxoplasma gondii and related apicomplexan
parasites, including Cryptosporidium, Sarcocystis, and Plasmodium. The
long-term goal will be focused on developing better and more efficacious
antiparasitic drugs for these parasites - particularly opportunistic pathogens
associated with AIDS. Interference with pyrimidine synthesis has
traditionally provided the most effective tool for management of clinical
toxoplasmosis. However, despite the fact that (i) all of these pathogens are
purine auxotrophs, (ii) the existing precedent of subversive purines as
effective treatment for other parasitic diseases, and (iii) that the
availability of antiparasitic lead compounds that target either purine or
pyrimidine salvage pathways, the latter two pathways have not been extensively
explored as targets for chemotherapeutic treatment of either T. gondii or
other apicomplexans. Reagents previously developed through this research
collaboration include: (1) a genetic map of nucleotide salvage pathways in
Toxoplasma; (2) molecular clones encoding T. gondii UPRT, HGXPRT, AK, NTPase,
and the parasite's major adenosine transporter; (3) milligram quantities of
each of the above soluble enzymes purified to homogeneity, and heterologous
systems for transporter expression; (4) high-resolution crystal structures for
UPRT, HGXPRT, and AK; and (5) transgenic parasites harboring mutations in (or
altered expression of) each of the above genes. These reagents are expected
to permit structure-based discovery of new drug classes that target proteins
necessary for parasite survival.
Currently available molecular, biochemical, and cellular reagents and data
that have become available through these studies include:
(i) Molecular clones. Full length genomic and cDNA sequences for T. gondii
uracil phosphoribosyl transferase (UPRT), nucleoside triphosphate hydrolyze
(NTPase), hypoxanthine-guanine-xanthine phosphoribosyl transferase (HGXPRT),
adenosine kinase (AK), and the parasite's major adenosine transporter (AT).
(ii) Recombinant proteins. E. coli that overexpresses T. gondii UPRT,
HGXPRT, AK, or NTPase and effectively provides unlimited quantities of these
proteins purified to homogeneity. Functional expression of recombinant AT in
a Xenopus oocyte assay system.
(iii) Crystal structures. High-resolution three-dimensional crystal
structures for the UPRT, HGXPRT, and AK proteins determined by x-ray
crystallography.
(iv) Transgenic parasites. UPRT-, HGXPRT-, and AK-knockout transgenics
created by homologous gene replacement in otherwise syngeneic wild type
parasites. AT and xanthine transporter (XT) transgenics isolated by
imertional mutagenesis. NTPase-deficient transgenics in which the endogenous
enzyme is down-regulated by antisense expression.
Specific aims for the proposed studies include:
(1) performing a detailed biochemical and structural characterization
of T. gondii UPRT and AK enzymes. The resolution of the T. gondii UPRT and AK
enzymes will be extended and enzyme-substrate and enzyme-product structures
determined in order to provide a full understanding of their catalytic
mechanisms, and to facilitate the discovery of novel inhibitors through
computational methods (see Specific Aim 2). High-resolution crystal
structures of a series of site-directed mutant UPRT and AK proteins will also
be carried out to assess the roles of key residues in substrate specificity
and catalysis. Mutant enzymes will be purified from E. coli for kinetic
appraisal, and crystal structures will be determined by molecular modification
or molecular replacement to ascertain structural changes. The phenotypic
consequences of mutations of interest will be tested in intact parasites by
replacement of either the wild type UPRT or AK allele with an appropriate
targeting construct;
(2) developing screens for identifying and evaluating novel classes of
potential antiparasitic drugs that target either UPRT or AK. Small-molecule
structural databases will be screened computationally using the
crystallographically determined high-resolution apo- and substrate- and
product-bound UPRT and AK structures to identify novel compounds that may
interact with the active sites of either enzyme. Compounds that are
computationally predicted to target the active site of the T. gondii UPRT or
AK enzymes will be evaluated as potential lead compounds against the purified
UPRT or AK enzymes; E. coli expressing T. gondii UPRT or AK cDNAs; and wild
type, UPRT- or AK-T. gondii parasites in culture. The crystal structures will
be solved for UPRT or AK co-crystallized with promising lead compounds;
(3) functionally characterize, localize, and genetically dissect the T. gondii
adenosine transporter (AT). AT ligand specificity and kinetic parameters will
be determined in detail by functional expression of the AT cDNA in Xenopus
laevis oocytes and/or nucleoside transport (NT)-deficient Leishmania donovani.
The applicants also plan to use electrophysiologic approaches in the Xenopus
expression system to ascertain whether AT is a proton- or Na(+)-coupled
symporter that actively concentrates adenosine. Antibodies against AT will be
used to determine the subcellular location of AT by immunofluorescence and
immunoelectron microscopy. Finally, forward genetic approaches will be
implemented to initiate a structure-function analysis of key amino acids of AT
that participate in ligand recognition or that govern substrate specificity;
(4) isolation of XT cDNA and characterizing the properties of T. gondii XT.
The XT gene will be isolated from insertional mutants by marker rescue and
used to obtain full-length cDNA clones. Functional properties of XT will be
evaluated after heterologous expression of XT cDNA in Xenopus oocytes, and the
transporter will be immunolocalized after generating monospecific antibodies;
and
(5) to crystallize and solve the x-ray structure of the T. gondii NTPase and
determine how enzymatic activity is regulated. The NTPase cDNA has been
overexpressed in E. coli providing ample and replenishable quantities of
monomeric recombinant protein for initial crystallization trials. In
parallel, the production, purification, and crystallization of enzymatically
active oligomeric NTPase will be pursued. Ultimately, these crystallization
experiments will lead to the x-ray structure determination of the NTPase by
multiple isomorphous replacement. Concurrent experiments will determine how
NTPase functions in AK HGXPRT-, and AT parasites, identify the protein(s)
which regulate NTPase enzymatic activity, and evaluate the impact of
abrogating NTPase expression on parasite viability.
National Institute of Allergy and Infectious Diseases
CFDA Code
856
DUNS Number
096997515
UEI
NPSNT86JKN51
Project Start Date
30-September-1999
Project End Date
31-August-2004
Budget Start Date
01-September-2000
Budget End Date
31-August-2001
Project Funding Information for 2000
Total Funding
$688,098
Direct Costs
$568,723
Indirect Costs
$119,375
Year
Funding IC
FY Total Cost by IC
2000
National Institute of Allergy and Infectious Diseases
$688,098
Year
Funding IC
FY Total Cost by IC
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