Profilin is the prototype of small proteins that sequester actin monomers.
Recently a host of demonstrated or putative new functions for profilin have
emerged. Genetic experiments on flies and yeast established a role for
profilin in the function of the actin cytoskeleton. Biochemical studies
suggest a dual role for profilin as a component of the phosphoinositide
signal transduction machinery and as a messenger from the membrane to actin
and other ligands. In addition, the ability to bind poly-L-proline is a
common feature among profilins. This system is also ideal for testing the
Structure-Based Thermodynamic Analysis (SBTA) model developed by Freire and
others. This model predicts the thermodynamic parameters describing
protein folding/unfolding using only the change in buried polar and apolar
area as structure-specific information. The deltaH, delta S and deltaG for
the binding of angiotensin II to an antibody were quantitatively predicted
by this model. We plan to probe its range of validity by using it to
analyze the binding of proline-rich peptides to profilin. We thus propose
to:
Refine and compare the NMR and x-ray structures of profilin I from
Acanthamoeba.
Compare the structures of Acanthamoeba and vertebrate profilin as a basis
for phylogenetic analysis.
Identify high affinity proline-rick peptides and proteins that bind to the
polyproline binding site on profilin using a structure based fluorescent
derivatives of profilin and phage display methods, determine the structure
of the complex of these peptides with profilin by NMR or crystallography.
Characterize the energetics of binding of profilin to polyproline and to
the proline rich ligands; determine if the measured values are predicted by
the SBTA model of murphy and Freire.
Acanthamoeba actophorin is a member of a family of actin monomer
binding/actin filament severing proteins that includes actin depolymerizing
factor, destrin, cofilin, and depactin. The physiological functions and
mechanisms of action of these proteins is still under investigations. To
provide a structural basis for advanced studies of these proteins, we
propose to:
Complete and refine the actophorin crystal structure by the MAD phasing
method.
Crystalize and determine the structure of vertebrate cofilin for comparison
with actophorin.
Crystalize the complex of actophorin with SADP-actin.
Explore the mechanism of actin-filament severing by modeling of the actin-
actophorin complex. We will attempt to crystalize a number of actin-
binding proteins.
Public Health Relevance Statement
Data not available.
NIH Spending Category
No NIH Spending Category available.
Project Terms
AcanthamoebaX ray crystallographyactin binding proteinactinsbinding proteinscalorimetrychemical bindingcomputer simulationcrosslinkcrystallizationevolutionfluorescent dye /probeinositol phosphatesligandsmathematical modelmyosinsnuclear magnetic resonance spectroscopyprolineprotein purificationprotein structurestructural biologythermodynamicsthymosinvaccinia virus
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