Awardee OrganizationH. LEE MOFFITT CANCER CTR & RES INST
Description
Abstract Text
The primary purpose of the Core B facility is to provide researchers of the P01 with rapid and cost effective
high throughput screening and molecular modeling of their targets with the ultimate goal of identifying "hits'
for further chemical lead optimization and biological characterization. The Core B facility comprises two
functional units: Experimental HTS and Virtual HTS/ Molecular Modeling. The two units work closely together
to provide complementary approaches toward screening biomolecular targets and toward aiding the lead
optimization process by serving as a resource for molecular modeling studies. The specific functions of Core
B include: 1) Experimental HTS: To screen the chemical libraries prepared by projects 1, 2, 3, 4 and 5 as
well as in-house chemical libraries to identify compounds capable of inhibiting SHP2 and chymotrypsin-like
proteasome activities as well as Rb/Raf, Bcl-xL/Bax and MDM2/MDMX/p53 associations. Our in-house
chemical libraries include the publicly available NCI Diversity, Natural Product, Challenge and Mechanistic
Sets as well as a 20,000 diverse chemical compound library we purchased from Chemical Diversity Labs
(ChemDiv). The 20,000 compounds were selected from ChemDiv's ~600,000 compound collection, which
consists of ChemDiv's internal synthesis efforts as well as procurement from laboratories around the world ,
to represent maximal chemical and structural diversity. Experimental assays will also be preformed for the
evaluation of ADME properties. 2) Virtual HTS: To search compound databases (-650,000 3D models)
based on the X-ray or NMR structures of SHP2, MDM2, Bcl-xL and the chymotrypsin-like subunit of the
proteasome. 3) Molecular Modeling: The best scoring compounds from virtual screening and, in particular
the experimentally confirmed "hits" from virtual screening, will be subjected to additional molecular modeling
studies including 3D QSAR analysis to aid the lead optimization process. 4) Prediction of ADME Properties:
The QikProp computer program (Schrodinger, L.L.C.) will be employed for the in silica prediction of ADME
properties of "hits" and to optimize ADME properties of potential drug candidates. 5) Data analysis and
management: To facilitate communication among projects 1, 2, 3, 4 and 5 and Core A, B and C, we have set
up a centralized database for all related scientific data, The maintenance of the infra-structure of the
database is supported by the Moffitt IT Core Facility. Core B will be responsible for the management of the
content of the databases. The database will allow users a) to register and track all compounds prepared by
projects 1,2,3,4 and 5 from synthesis/acquiring, shipment to testing; b) to search and review chemical and
biological data from projects 1, 2, 3, 4, 5 and Core B and C.
No Sub Projects information available for 1P01CA118210-01A1 9002
Publications
Publications are associated with projects, but cannot be identified with any particular year of the project or fiscal year of funding. This is due to the continuous and cumulative nature of knowledge generation across the life of a project and the sometimes long and variable publishing timeline. Similarly, for multi-component projects, publications are associated with the parent core project and not with individual sub-projects.
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Patents
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Outcomes
The Project Outcomes shown here are displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed are those of the PI and do not necessarily reflect the views of the National Institutes of Health. NIH has not endorsed the content below.
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Clinical Studies
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History
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