Spectroscopic Studies of Enzyme/Substrate Complexes
Project Number3R01GM035752-21S1
Contact PI/Project LeaderREED, GEORGE H
Awardee OrganizationUNIVERSITY OF WISCONSIN-MADISON
Description
Abstract Text
The objectives of the project are to gain a better understanding of the the free radical based mechanisms for
enzymic catalysis and the role of the adenosyl radical in initiation of the these reactions. Free-radical
reactions are of fundamental importance in biology. Although radicals that are generated adventitiously in
living system are detrimentral, nature uses free radicals in order to carry out difficult steps in biosynthesis
and metabolism. The adenosylcobalamin (AdoCbl)-dependent enzymes represent one famiily of enzymes
that carry out free radical mediated reactions. Ethanolamine ammonia-lyase is an AdoCbl-dependent
enzyme from bacteria. The enzyme catalyzes the conversion of ethanolamine to acetaldehyde and
ammonia, and bacteria which contain the genes for this enzyme are able to grow on ethanolamine, obtained
from the breakdown of phospholipids, as their sole source of carbon, nitrogen and energy. The enzyme is a
member of a group of AdoCbl-dependent enzymes which catalyze the interchange of positions of a
hydrogen atom and a substituent on adjacent carbon atoms. These enzymes use AdoCbl to initiate the
radical-mediated rearrangement through homolysis of the cobalt-carbon bond of AdoCbl to give
cob(ll)alamin and the reactive 5'-deoxyadenosyl radical. Some of the free radical intermediates in the
reaction of substrates reach concentrations such that they can be observed by electron paramagnetic
resonance (EPR) spectroscopic methods. These intermediates will be identified through their characteristic
nuclear hyperfine splitting patterns in EPR spectra. Substrate analogs which lead to suicide inactivation of
the enzyme by free-radicals that stray from the normal reaction pathway will be identified by spectroscopic
methods and by identifiction of the reaction products. Factors leading to a greater than trillion fold
acceleration in the rate of cobalt--carbon bond cleavage in enzyme-bound AdoCbl will probed by
measurement of the epimerization of a chiral 5'-deutero form of AdoCbl using nuclear magnetic resonance
methods. The mechanism for the rearrangement steps in the catalytic cycle will be probed by measurement
of nitrogen kinetic isotope effects for substrates using isotope ratio mass spectrometry. Genes for the
enzyme from different species of bacteria will be cloned and over expressed in E. coli, and the proteins
subjected to screens for crystallization.
No Sub Projects information available for 3R01GM035752-21S1
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