Contact PI/Project LeaderFITZGERALD, PAUL GILLESPIE
Awardee OrganizationUNIVERSITY OF CALIFORNIA AT DAVIS
Description
Abstract Text
Intermediate filaments (IPs) are present in essentially every human cell. However, the
inability to achieve crystal structure for intact IF proteins or IFs means that our understanding of IF
structure is based in large part on predictions made from primary sequence and from limited cross-
linking studies. Thus, most features of commonly presented models of IF structure are
experimentally untested, or based on data which is open to alternative interpretation. This places
serious limits on our ability to understand normal IF function, and the changes in IF assembly and
structure that are caused by the many disease-causing mutations that have been identified in
human IF genes.
We have demonstrated that site directed spin labeling and electron paramagnetic resonance
can provide excellent structural information from intact IFs in physiologic conditions. We propose
here to conduct an exhaustive study of the Type III IF protein vimentin, assembling the first
comprehensive map of an intact intermediate filament. We will then conduct similar experiments on
another Type III IF protein, desmin, and on cytokeratin IFs made from K8 and K18 to determine the
degree to which IF assembly and structure are conserved among the three most common forms of
intermediate filaments.
These studies will map the location and boundaries of alpha-helical, coiled-coil domains,
linker regions, the conserved "stutter" found in all IF proteins, the boundaries of the rod domain, the
surfaces of apposition between monomers in dimers, and between dinners in intact filaments, the
registry and orientation of these dimers, and the sites of IF proteins that are available at the surface
of the IF for interactions with other cellular proteins/structures. Sites within the head and tail
domains that interact with one another, and with the rod domain will be mapped as well. Finally, we
will explore the impact of known disease-causing mutations on IF assembly and structure.
No Sub Projects information available for 5R01EY015560-04
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