Mechanism for loading the E. coli beta clamp on DNA
Project Number3F31GM073586-03S1
Contact PI/Project LeaderSCOUTEN, SARAH KATHARINE
Awardee OrganizationSTATE UNIVERSITY OF NEW YORK AT BUFFALO
Description
Abstract Text
The long term goal of this research is to understand how organisms coordinate the replication and repair of
their genomes. The use of processivity clamps that must be loaded onto DNA during replication of
chromosomes by an ATP dependent clamp loader complex is highly conserved by all forms of life.
Understanding how organisms coordinate DNA replication and repair is the fundamental basis for
understanding human diseases such as cancer. The goal of the work proposed here is to better define the
mechanism of clamp loading in the E. coli model system. The E. coli clamp loader (y complex) is a
multisubunit complex that undergoes a conformational change upon binding ATP which facilitates opening of
the p clamp and its subsequent loading onto DNA. The contacts of the individual clamp loader subunits with
P differ between the ATP bound and free states of y complex. The interactions of the y complex subunits
with p in both the presence and absence of ATP will be determined. Biochemical assays using various
clamp and clamp loader mutants will be uilized to accomplish this. The insight gained from E. coli can
provide a framework for elucidating the mechanisms of eukaryotes, including humans.
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