Using GTEx to assess the functionality of sex-biased variants
Project Number7R03OD030598-02
Former Number1R03OD030598-01
Contact PI/Project LeaderSOEMEDI, RACHEL Other PIs
Awardee OrganizationBRIGHAM AND WOMEN'S HOSPITAL
Description
Abstract Text
Contact PD/PI: Soemedi, Rachel
PROJECT SUMMARY
Sex differences in human diseases are well-recognized, but the mechanisms are not well
understood. This gap of knowledge delays the progress in risk assessment and therapeutic
strategies for sex-aware precision healthcare. While studies have shown significant sex
differences in the genetic architectures of complex diseases, most investigators opted to do sex-
combined analyses in disease genetic studies to maximize statistical power. NIH recently began
to reinforce the inclusion of sex as a biological variable in the design, analysis, and reporting of
vertebrate animal and human studies. Insights into the functional genetic bases of sex as a
biological variable are critical to develop therapeutic interventions that equally benefit each sex.
We recently found that ~1% variants in the population have sex-biased allele frequency, including
~10% of disease variants in the Genome Aggregation Database (gnomAD). These variants
preferentially occur in tissue-specific sex-differentially expressed genes. We propose a novel
approach to study sex differences in disease genetic architectures by leveraging variants that are
sex-biased either in allele frequency or phenotypic association. We believe this approach will
increase the statistical power to identify sex-specific or sex interacting causal variants in sex-
biased diseases. We will identify and characterize sex-biased variants in gnomAD, Genotype-
Tissue Expression project (GTEx) and Trans-Omics for Precision Medicine for sleep disordered
breathing phenotypes and venous thromboembolism case-control datasets. We will subsequently
study the functional mechanisms of these sex-biased variants in ~50 GTEx tissues. The
completion of this pilot study will advance future genetic studies of sex-divergent disorders and
accelerate the realization of sex-aware genomic medicine.
Project Summary/Abstract Page 6
Public Health Relevance Statement
PROJECT NARRATIVE
Sex differences in human diseases are common, but they are not well understood. We will
establish a novel framework to study the genetic architectures of sex-biased diseases by
leveraging variants with sex biased allele frequency or phenotypic association. Understanding
the functional genetic bases of sex differences is critical in order to develop effective and safe
therapeutic strategies for sex-biased diseases.
Project Narrative Page 7
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