A Common Dialect for Infrastructure and Services in Translator
Project Number7OT2TR003449-03
Former Number3OT2TR003449-01S1
Contact PI/Project LeaderBRUSH, MATTHEW H. Other PIs
Awardee OrganizationUNIV OF NORTH CAROLINA CHAPEL HILL
Description
Abstract Text
1) We will build a robust, dynamic Translator Standards and Reference Implementations
Component (SRI) that integrates the collaborations and investments that the NCATS Translator
has made to date. This component will consist of a suite of standards and products, a model for
their governance, and processes to coordinate integration and shared implementation:
● Community governance coordination will be developed with community buy-in to ensure
an effective collaborative environment, and drive consortium-wide consensus on the other
components.
● Architecture and API specifications will drive community efforts to define details of project
architecture and communication protocols across Translator Knowledge Providers (KPs),
Autonomous Relay Agents (ARAs), and the Autonomous Relay System (ARS).
● The BioLink model will define the standard entity types, relationship types, and a schema
shared by all Translator components. This includes related utility libraries and a novel
approach to accommodate multiple alternate data modeling perspectives.
● Integrated reference ontologies will provide BioLink-compliant terms and relationships. We
will draw on the ROBOKOP Ubergraph framework [1] , the Monarch integrated ontologies,
and other ontologies from Open Biological and Biomedical Ontologies (OBO) [2] .
● A continually-updated knowledge graph and data lake will provide Translator with a
standardized and integrated global view of the whole information landscape.
● Next-generation Shared Translator Services will integrate features of ROBOKOP [3] ,
Monarch [4] , BioLink [5] , and the reasoner APIs to remove integration barriers. These
services will provide validation, lookup, and mapping functionality for use across Translator.
● A registry of Translator KPs, ARAs, and shared services will increase efficiency,
eliminate duplication of effort, and promote collaboration.
2) Our proposed SRI will address the problem of connecting together different components and
data/information sources at scale, with community buy-in, and with a plan for sustainability.
3) For the development of the standards component of the SRI, our plan will begin with
accepted Translator standards, and we will work with the ARS, ARAs, and KPs to identify gaps.
We will have a community process for contributing to the standards, making use of GitHub pull
requests and voting, to help everyone contribute effectively and fairly with clear attribution. We
will ensure rigorous documentation and testing. For the reference implementation component,
we will stand up core Translator services, and will include additional services if they are useful to
more than one Translator component rather than used by only one.
4) Consensus-building is hard. Our team has proven expertise and resources to identify needs,
refine solutions, and find agreement , thereby successfully bringing infrastructure to fruition. Our
team also has the technical and biological expertise to design and test the necessary standards,
having been at the forefront of multiple ontology, data standards, and large enterprise software
initiatives.
5) The Translator infrastructure is by nature heterogeneous, distributed, and growing;
consequently, the most significant data and infrastructure challenge is managing the validity,
currency, equivalency, and typing of entities (diseases, phenotypes, drugs, etc.). Our group has
developed several innovative algorithms for managing this and related problems; these
algorithms are in use for other integration projects and will be modified to suit Translator needs.
National Center for Advancing Translational Sciences
CFDA Code
350
DUNS Number
608195277
UEI
D3LHU66KBLD5
Project Start Date
13-September-2024
Project End Date
30-November-2024
Budget Start Date
13-September-2024
Budget End Date
30-November-2024
Project Funding Information for 2024
Total Funding
$878,642
Direct Costs
$697,335
Indirect Costs
$181,307
Year
Funding IC
FY Total Cost by IC
2024
National Center for Advancing Translational Sciences
$878,642
Year
Funding IC
FY Total Cost by IC
Sub Projects
No Sub Projects information available for 7OT2TR003449-03
Publications
Publications are associated with projects, but cannot be identified with any particular year of the project or fiscal year of funding. This is due to the continuous and cumulative nature of knowledge generation across the life of a project and the sometimes long and variable publishing timeline. Similarly, for multi-component projects, publications are associated with the parent core project and not with individual sub-projects.
No Publications available for 7OT2TR003449-03
Patents
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Outcomes
The Project Outcomes shown here are displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed are those of the PI and do not necessarily reflect the views of the National Institutes of Health. NIH has not endorsed the content below.
No Outcomes available for 7OT2TR003449-03
Clinical Studies
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History
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