Data Management and Compute Platform for Data Science Training - Supplementary Grant for DATICAN
Project Number3UE5EB035490-02S1
Former Number1UE5EB035490-01
Contact PI/Project LeaderARIBISALA, BENJAMIN SEGUN Other PIs
Awardee OrganizationLAGOS STATE UNIVERSITY TEACHING HOSPITAL
Description
Abstract Text
Supplementary Grant for DATICAN - Summary
The Data Science and Medical Image Analysis Training for Improved Health Care Delivery in Nigeria (DATICAN)
project is a UE5 DS-I Africa project funded by NIH. The main aim of DATICAN is to build capacity in Data Science
and medical image analysis. DATICAN’s overarching objective is to produce a new generation of data scientists
possessing the requisite data science skills in medical image analysis and the potential to become the clinical
research leaders needed to improve healthcare delivery in sub-Saharan Africa (SSA). DATICAN is a
collaborative effort amongst 4 universities, 3 in Nigeria and 1 in the USA, these are Lagos State University, The
University of Ibadan, Redeemer’s University and The University of Chicago. The project is funded for 3 years
from September 2023 to September 2026.
Project implementation started immediately after receiving the award letter in September 2023 and we have met
our target for year 1 recruitment. We have recruited 36 participants, comprising PhD and MSc students,
postdocs, and Faculty members. We are currently training and as contained in our year 1 plan, the USA trainers
have visited Nigeria and the Nigerian trainers have visited the USA this year.
DATICAN was structured to be skills acqusition-driven, hands-on and project-driven. To achieve these, each
trainee was given a project work related to improved healthcare delivery in SSA using data science and AI
knowledge. This implies that we have 36 use cases already. There are 3 major requirements for implementing
these use cases, these are the relevant skills set, local data peculiar to the SSA and computational resources.
We have started training the students and the progress recorded so far shows that DATICAN has the potential
to give the students the relevant skills required to execute their use cases. On local data, we have collected
medical images of 2000 individuals with different modalities (e.g. ultrasound, MRI, CT, etc) and different body
parts (brain, liver, abdomen, etc) and stored them on our hard drives, and there are many more to collect. The
unfortunate thing is that these images are unstructured, un-curated and some of them are even unlabelled.
This implies that the data are not in a useful form. On computational resources, imaging data are huge and
processing them requires access to compute infrastructure such as High-Performance Computing (HPC) with
Graphic Processing Units (GPUs). UChicago has given our trainees access to its HPC, the downside of this is
the lack of sustainability and scalability. DATICAN has a lifespan of 3 years and lack of access to
computational resources afterwards will make the acquired skills useless.
The aims of this supplementary project are (1) to extend DATICAN to include data curation and proper data
management, this is to make data sharing amongst the three institutions possible. (2) to procure an HPC with a
GPU that will meet the computational needs of our trainees. We strongly believe that both the computational
resources and repository will be useful not only for the member institutions of DATICAN, but for all data
scientists and clinicians interested in using AI and data science technologies to improve healthcare delivery in
Africa.
Public Health Relevance Statement
Project – Supplementary Grant for DATICAN
Title: Data Management and Compute Platform for Data Science Training -
1. Aim of this Supplementary Grant Request
This supplementary grant request aims to increase data management and data sharing infrastructure amongst
three African Institutions. These African institutions are members of DS-I Africa through DATICAN, a UE5 project
funded by NIH. The full meaning of DATICAN is Data Science and Medical Image Analysis Training for Improved
Health Care Delivery in Nigeria
2. The aim of the Parent Project called DATICAN
The main aim of DATICAN is to build capacity in Data Science and medical image analysis. DATICAN is a
collaborative effort amongst 4 universities, 3 in Nigeria and 1 in the USA, these are Lagos State University, The
University of Ibadan, Redeemer’s University and The University of Chicago. The project is funded for 3 years
from September 2023 to September 2026.
3. Measurable and Obtainable Objectives of DATICAN
DATICAN’s overarching objective is to produce a new generation of data scientists possessing the requisite data
science skills in medical image analysis and the potential to become the clinical research leaders needed to
improve healthcare delivery in sub-Saharan Africa (SSA). Our specific objectives are as follows.
1. Train participants in the use of Python and specific libraries, e.g., scikit-learn, pandas, pytorch, tensorflow
and keras.
2. Equip participants with practical skills required for extracting diagnostic information from medical images
and related medical data.
3. Train participants on how to define new biomedical research problems and hypotheses.
4. Train participants on how to identify the appropriate machine learning model or technology for solving a
particular biomedical research problem.
5. Train participants on organization, processing and management of large medical data.
6. Train participants on ethical issues and responsible conduct in biomedical research.
7. Create a repository of data and teaching materials during the training that will subsequently be open and
accessible to other researchers; that is, FAIR - Findable, Accessible, Interoperable and Reusable.
4. The Current Status of DATICAN
Project implementation started immediately after receiving the award letter in September 2023. The following
is a summary of the progress so far
a. Recruitments of Trainees. We started by recruiting the trainees proposed for year 1 of the project. We
were able to recruit 36 participants, comprising 12 PhD students, 12 MSc students, 6 postdocs and 6
Faculties. We achieved 100% of the recruitment target for year 1.
b. Training of PG students, Postdocs and Faculty. This is ongoing, conducted by UChicago colleagues
c. Training of Secondary School Students. This is ongoing. Conducted by Nigerian trainers
d. Hackathon in Lagos. This was held in the first week of April 2024. It was very successful and the
feedbacks were very positive.
5. Justification for Supplemental Project
The focus of DATICAN is to produce a new generation of data scientists who will be able to use their skills
to improve healthcare delivery in SSA. There are 3 major requirements for achieving this, these are the
relevant skills set, local data peculiar to the SSA and computational resources.
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a. Relevant skills set in Data Science and Medical Image Analysis. Our partner in the USA has
commenced training towards meeting the skills set requirement. The training started in
December 2023 as virtual classes. They visited Nigeria in the first week of April 2024 to conduct
practical physical and hands-on training. They will also be training the Nigerian trainers in
Chicago in the third week of April. The Nigerian trainers were visiting UChicago when this
supplementary grant application was submitted, to receive hands-on training through the
training-the-trainer programme organized by UChicago. These Nigerian trainers will take over
the training responsibilities from our USA partner in the second year of the project. This
approach was to allow Nigerians to take charge and own the training thereby making the project
sustainable. With the progress so far, we are optimistic that DATICAN already has the potential
to bridge the skill gap in data science with application in medical image analysis.
b. Local Data and Repository. Irrespective of the skill sets of our trainees, it will be impossible for
those skills to give good products that could help to improve healthcare delivery without access
to local data. This is because data science and Artificial Intelligence technologies are data-
driven and African data is unique because of many factors, such as lifestyles and genetic
compositions. Through our partnership with some teaching hospitals in Nigeria, we have
identified some medical imaging data like Magnetic Resonance Images, Computed
Tomography, Mammograms, Ultrasound, X-Rays, etc. We have collected some of these
imaging data and stored them on our hard disk. We were excited to see that there are hundreds
of thousands of medical imaging data available in Nigeria. We planned to build a repository for
these images, but unfortunately, the data are unstructured, un-curated and some of them are
even unlabelled. This implies that the data are not in a useful form. We need data common to
collect and store de-identified data from our partnering hospitals. The data will be used for
training and for implementing the different projects to be executed by our trainees. We also
need a platform that is Health Insurance Portability and Accountability Act (HIPAA) - compliant
to avoid violation of the privacy and security of the data. Our number one priority in this
supplementary project is to extend DATICAN to include data curation and proper data
management, this is to make data sharing amongst the three institutions possible. The data
curation will contain the following stages
1) Data Collection and Data Integration. This will require visiting 5 teaching hospitals that
we currently partner with. University College Hospital Ibadan (UCH), Lagos State
University Teaching Hospital (LASUTH), Obafemi Awolowo University Teaching Hospital
(OAUTH), Afe Babalola University (ABUAD) and University of Lagos Teaching Hospital
(LUTH). The data were acquired for different purposes and using different protocols but
most of them are in dicom formats. We will arrange and integrate them based on the
clinical conditions, image modalities, anatomy and diagnosis
2) Data Cleaning. The datasets are unstructured and contain a mixture of modalities and
anatomy. We will need to separate them, remove dirty data and sort them into a usable
form
3) Data Labelling. Most of the images do not have diagnosis information. We will work with
the medical experts to supply diagnosis information and then label the images
appropriately
4) Data Anonymization. All the datasets contain patient’s information. We will need to
write computer programs to anonymize the data before use.
5) Data Storage. All cleaned, well sorted and anonymized data will be stored in a
dedicated server.
6) Local Repository development. The dataset will be used to build a repository. This will
be the first repository containing Nigerian medical images. We anticipate that the
repository will contain about 10,000 medical images of different modalities, anatomy and
from different sites within Nigeria. We will make efforts in the future to secure grants to
extend the repository to contain more images.
c. Computational Resources. Application of Data Science and AI technologies in medical image
analysis requires access to compute infrastructure such as High-Performance Computing (HPC)
with Graphic Processing Units (GPUs). This is mainly because medical images are huge and
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processing them on CPU alone is not feasible, most especially when training large volumes.
Our original plan was to leverage the HPC of our USA partner, the University of Chicago
(UChicago). We have submitted a request to UChicago for all our trainees to be given access to
the HPC of UChicago. We got the approval in March 2024 and DATICAN-LAB has been created
for us. All our trainees now have access to the HPC of UChicago. This is, obviously, a great
achievement for us and we are grateful to UChicago and NIH for this unique opportunity given
to Nigerians through DATICAN. The downside of this is the lack of sustainability and scalability.
The lifespan of DATICAN is 3 years, so what happens to our trainees in terms of access to HPC
after DATICAN? The only way forward is for us to have our own HPC. Additionally, the skills
acquired by our trainees will be useless if they do not have access to computational resources
similar to the ones that we are currently training them on. Our number two priority in this
supplementary project is to acquire an HPC with a GPU that will be housed in a secured data
center in LASUTH and accessible to all partnering institutions. A desktop system equipped with
GPU will also be procured at the training location at LASUTH for faster data processing and
visualization.
6. Science Drivers and Use Cases
6.1 Case Study
DATICAN currently has 36 trainees, comprising of PhD students, MSc students, postdocs and early career
Faculties from 3 Universities. An additional 36 participants will be recruited in years 2 and 3 of the project. Each
of the current participants has a project focusing on using data science technology and medical image analysis
skills to solve health-related problems in Africa. All the projects require access to African medical data and an
HPC. Please see Table 1 for the list of project topics of the current 36 trainees. The topics cover patients with
breast cancer, stroke, pulmonary tumour, cervical cancer, lung cancer, sickle cell anaemia, stroke, tooth
problems, skin cancer, dementia, tuberculosis, prostate cancer and traumatic brain injury using diverse imaging
modalities like MRI, ultrasound, mammogram, Computed Tomography and X-rays images. We have data
available at 5 teaching hospitals that we currently partnering with us, these are University College Hospital
(UCH), LASUTH, OAUTH, ABUAD and LUTH. These data were acquired after securing the Institutional Review
Board (IRB). The data were acquired for different clinical conditions and using different protocols but most of
them are in dicom formats. We have collected about 2000 of these datasets already.
6.2 Sample Use Cases
We have 36 use cases but we will explain two here. First, one of our trainees is working on the detection of
hyperacute and acute staged ischemic brain stroke and his focus is to use MRI images. We already have about
1000 images of brain MRI. To execute this project, the trainee will need to collect the brain MRI images from
DATICAN. Then clean, anonymize, and use it to build his deep learning model. Then the raw data and processed
data will be curated. The trainee will be supported by the data Curator and Radiologist to be hired as part of this
project. The data curator will help with data cleaning, anonymization and curation while the radiologist will help
with labelling.
Another example is about a trainee working on the early detection of breast cancer using machine learning
techniques. We have already collected about 1000 mammogram images. The trainee will collect the data from
us. Then clean, anonymize, and use it to build his machine learning model. Then the raw data and processed
data will be curated. The trainee will be supported by the data Curator and Radiologist to be hired as part of this
project. The data curator will help with data cleaning, anonymization and curation while the radiologist will help
with labelling.
6.3 Data Curation and Integration
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The current dataset are not labelled, not anonymized and not curated. We will get the data labelled, cleaned,
anonymized and curated. We will also integrate the data because they come from different succes and for
different purposes. We will build a repository with a user interface to allow easy search and querries.
Table 1: Use cases for DATICAN Trainees
Name Uni
Degree
in View Use Case
1
Adebowale, Ahmed
Adedayo LASU PhD
Improved Detection of Hyperacute and Acute
Staged Ischemic Brain Stroke using Medical
Imaging and Deep Learning Approach.
2
Azeez, Rahman
Diekola LASU PhD
Enhancing CNN-Based Pulmonary Tumor
Detection using Generative
Adversarial Networks (GANs) for Low-Quality
Medical Imaging Data
3
Salami-Ohida,
Sefiyat Oyiza LASU PhD
Development of Machine learning model for
cervical cancer detection using ultrasound images
4
Tijani, Rukayat
Adetoun LASU PhD
Predictive Modeling for High-Risk Lung Cancer
Patient Identification
5 Oluwole Olajide UI PhD
Leveraging Data Science and Medical Images
Techniques to Enhance Early
Diagnosis and Treatment of Sickle Cell Anemia
(SCA)
6 Adebiyi Yemisi UI PhD
An improved Region-Convolution Neural Network
(RCNN) Detection Algorithm for Breast Cancer
from Medical Images.
7 Ogunseye Elizabeth UI PhD
Multi-label Classification and Severity Evaluation
in Clinical and Medical Image Data using Deep
Learning
8
Augustine
Onyekwelu UI PhD
Automated Detection, Localization, and
Classification of Haemorrhagic Stroke using
9
Otun, Yetunde
Deborah RUN PhD
Development of deep learning models for early
detection of breast cancer in women
10
Olorunfemi,
Blessing Oluwatobi RUN PhD
Integration of Deep Learning Models, and
Sequential Ensemble Methods for Early Detection
and Classification of Breast Cancer
11
Alu, Micheal
Damilola RUN PhD
Early Detection of Breast Cancer in Nigerian
Women: A Multi-Modal
Imaging Approach with Deep Neural Network
12 Awoniran, Temitayo RUN PhD
Development of a Deep Learning Model for Breast
Cancer Prediction in Nigerian women.
13
Olabayo,
Oluwasegun LASU MSc
Revolutionizing Tooth Decay Detection With
Analytics: The Advancements In Early
Intervention And Paradigm Shift In Monitoring
Progression
14 Charles, Edward LASU MSc
Data Analysis for Early Detection of Breast
Cancer in Nigeria: The
Advancements in Early Intervention and
Monitoring Progression
15 WHETO, Paul LASU MSc
Computational model for generating synthetic
brain medical data
16 KAREEM, Wahab LASU MSc
Medical image analysis using artificial intelligence
(AI): Image retrieval (finding anomalies, such as
brain tumors) A Case Study of Lagos State
University Teaching Hospital
4
17
Oke, Monday
Whenayon UI MSc
Deep Learning Approach on Low-Resolution CT
images in Resource-Constrained
18
Akintola, Mayode
Mercy UI MSc
Modeling a Machine Learning Mechanism for the
Detection and Classification of Skin Cancer
19
Akinola Marvellous
Timothy UI MSc
A Localized Chest X-Ray Imaging Repository for
Enhanced Predictive
Healthcare
20
Ola Ayokunle
Joshua UI MSc
Development of a Predictive Deep Learning
Model for Enhanced Breast
21
Adegoke, Ayomide
David RUN MSc
Development of an Ensemble of Deep Neural
Networks for Early
Detection of Breast Cancer Using Multi-Modal
Imaging.
22
OYETUNDE,
Oluwabukunmi RUN MSc
Automated brain tumor segmentation in MRI
images using transfer learning
23
Oyekunle, Isaac
Olusegun RUN MSc
Computational model for generating synthetic
brain medical data
24 Amore, Oluwaseun RUN MSc
Design and Implementation of Early Breast
Cancer Detection System Using Computer Vision.
25 Kehinde Sotonwa Faculty LASU
Development of a Deep Learning Model using
Biomarkers for Digital Pathology
26 Hanat Raji-Lawal Faculty LASU
Dementia Prediction and Detection Using
Machine Learning Techniques
27 Mauton Asokere Faculty LASU
Development of a Deep Learning Model for
predicting Prostate cancer using Digital Pathology
Images
28 Ayodele Oloyede Faculty LASU
Multilabel Concepts Detection in Large Biomedical
Images
29 Babatunde Ayinla Faculty UI
Panoptic Multiorgan Multi-Climate Medical Image
Analysis for Abnormality Detection Using CNN
30 Kadijat Ladoja Faculty UI
Improved Machine Learning Model for Skin
Cancer Classification
31 Oludele Adeleke Faculty UI
Disorder(ASD) and traumatic brain injury
diagnosis
32 Oladimeji Arowolo Faculty UI
Development of Deep Learning Models for
Tuberculosis Detection on Chest x-Ray Images
33
Adenike Adegoke
Elijah Faculty RUN
Deep Learning Approach for The Classification of
Infective Pneumonia Using X-Ray Data
34
Toluwase
Olowookere Faculty RUN
Investigating the Few-Shot Learning Approach in
the Classification and Detection of Rare Dental
Conditions and/or Oral Cancers in Nigeria Using
Dental X-Ray Imaging Data
35
Theresa O.
Ojewumi Faculty RUN
Development of a pneumonia disease detection
system using Convolutional Neural Networks
36 Idowu Oyetade Faculty RUN
Stroke Detection Using MRI Images and Deep
Learning
Note. LASU =
Lagos State
University,
RUN=
Redeemer’s University, UI=Universirty of Ibadan
7. Proposed Needs for Data Curation and Computational Resources
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a. We need 2 Information Technology (IT) experts to help with data curation and anonymization. They will
have BSc. Degree in IT related field. The 2 people will be hired for 1 year, 2024 to 2025 and will work
under the direct supervision of the PI for DATICAN. Their main responsibilities will be
1) Data cleaning
2) Data anonymization
3) Data curation
4) Data storage
5) Repository development
6) Development of pipeline for 1 to 4 above
7) Development of data request policy to enhance seamless data sharing
b. We need two radiologists to help with the labelling of the images. The Radiologists must be interested
in research and be willing to support our trainees. The right candidates will be early career persons at
each site who will work under the direct supervision of the MPI in Ibadan. He/She will be hired for 1
year, 2024 to 2025.
c. Computational Resources
1) GPU server and central storage
i. A node with 2 GPUs
ii. (A network attached storage: ~100-200 TB => supported by DATICAN budget )
2) Desktop with a commodity grade GPU
3) Note that the hardware will be procured with a minimum of 3-year hardware warranty and support
for stability of services
8. Timelines
Implementation of this supplemental project will commence upon funding of the project. The project is to
cover 1 year and the time plan is given in Table 2. In summary, we will start by recruiting the technical staff
and purchasing the requested hardware. These will be followed by the data collection, data cleaning,
anonymization, etc. The project is planned for 1 year.
Table 2. Activity Plan
SN Deliverables Qtr 1 Qtr 2 Qtr 3 Qtr 4
1 Recruitment of IT experts and Radiologist X
2 Procurement of GPU X X X
3 Data Collection X X
4 Data Cleaning X X
5 Data Anonymization X X X
6 Data curation X X X
7 Data Storage X X X
8 Repository development X X
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Development of pipelines for Data
Engineering X
10
Development of data request policy to
enhance seamless data sharing X
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9. Personnel
9.1 Program Director / Principal Investigator at LASU
Benjamin Aribisala, PhD - LASU, Nigeria (PI) - Professor of Computer Science, a data scientist and a medical
image analyst. He has held many high-profile administrative positions in the University. For example, he was the
Dean of Faculty of Science and former member of the governing council of Lagos State University. He was also
a member of the Technical Advisory Board of African Open Science, Chairman of the Computer Science and
the immediate past Director of Information Communication Technology (ICT) directorate. He led the committee
that developed policies for the University, E.g., examination policy, revised promotion policy and automated
promotion process in Lagos State University. He obtained his PhD degree in Computer Science from the
University of Birmingham, UK and worked as an academic staff in 2 Universities in the UK before going back to
Nigeria. He has over 28 years of teaching and research experience out of which about 11 were in leadership
positions. He has supervised many PhD students and mentored many faculties. Some of his ex-students are
now full professors. He has more than 100 peer reviewed papers published at reputable journals including nature.
According to google scholar, he has been cited more than 8000 times in more than 80 countries. He has been
awarded a number of grants, for example grants by British Council, Federal Government of Nigeria, Lagos State
and IBM. He has served as an accreditation team member at national level and has led many training and
mentoring programs, for example, he collaborated with Catania University in Italy in 2017 to organize Hackfest
on development of e-infrastructure and science gateway in Nigeria. Benjamin was a Fulbright Scholar at the
University of Chicago as a visiting professor in 2022 when DATICAN was conceived. The visiting position at the
University of Chicago gave him the opportunity to work closely with the faculties, have access to health data,
have access to computational resources and to set up the team for the DATICAN project.
9.2 Principal Investigators at UChicago, RUN, and UI
1. Alexander Pearson, MD, PhD - UChicago, USA (PI) – Earned multiple degrees in statistics and pursued
post-doctoral work combining cancer biology and applied mathematics. He runs a multi-disciplinary
systems biology research group to develop new computational precision oncology approaches for patient
care. His primary appointments are in the Section of Hematology/Oncology, joint appointments in the
Section of Computational Biomedicine and at Argonne National Laboratory. He is the Director of the Head
and Neck Cancer Program and Director of Data Sciences in the Section of Hematology/Oncology.
2. Adenike Adeniji-Sofoluwe, MBBS, FWACS, FMCR, MS - UI, Nigeria (PI) – Senior Lecturer in Radiology
and director of the radiology residency training program at the University College Hospital, Ibadan. She is
one of the most experienced breast radiologists in the Nigerian breast cancer study group and the
genomics group at UI.
3. Happi Christian (PI) . He is a professor of molecular biology and has a lot of experience in project
management and training. We we leverage on his experience from his ongoing project on antimicrobial
study for treatmentment of infectious diseases. He will provide some data which will be useful for training
on infectious diseases. He will also provide guideance when necessary.
9.3 Co - Investigators at UChicago, RUN, and UI
Olufunmilayo (Funmi) I. Olopade, MBBS, FACP – UChicago, USA (Co-I) – is the Chair of the Steering
Committee for DATICAN. She is the Walter L. Palmer Distinguished Service Professor of Medicine and Human
Genetics, and Dean for Global Health at the UChicago. Olopade is Program Director for NCI funded R25, T32
and K12 grants at UChicago. As a hematologist/oncologist, she has led teams of interdisciplinary researchers in
conducting research on genomic determinants of breast cancer in women of African ancestry in the U.S. and
internationally. The Doris Duke Charitable Foundation has recognized Olopade as a Distinguished Clinical
Scientist and Exceptional Mentor. She is committed to fostering the careers of others and to helping the
UChicago strengthen its international reputation as a leader in academic medicine by mentoring the next
generation of global leaders in biomedical research.
Godwin Ogbole, MBBS, FMCR, FWACS, MSc, MRP, MSCI - UI, Nigeria (Co-I) - A neuroradiologist, medical
image analyst and clinician, Ogbole has wealth of experience in clinical research related to neuropsychological
conditions using MRI, CT and X-ray. He has been involved in coordinating imaging seminars and
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interdisciplinary brain workshops in Nigeria's largest teaching hospital and the West African sub region for the
past ten years. These were designed to optimize care and imaging intervention in resource-poor settings to
foster prevention and mitigation of non-communicable diseases through research and education. As regional
Secretary of the Society for Brain Mapping and Therapeutics in Nigeria, he is building a platform for developing
capacity in advanced brain imaging analysis techniques.
Steffen Sammet, MD, PhD, DABR, DABMRS, FAMP - UChicago, USA (Co-I) - Professor of Radiology and
Medical Physics, Director of Clinical MR Physics, Vice Chair of the Point of Care Ultrasound Council, is a
physician and board-certified medical physicist by the American Board of Radiology with 25 years of
experience in medical imaging.
Hakizumwami Birali Runesha, Ph.D., USA (Co-I) – Associate Vice President for Research Computing and
founding Director of the University of Chicago Research Computing Center (RCC) with more than 28 year of
expericience in High Performance Computing, data science and application software development. His
research interests are in sparse numerical libraries, AI/Deep learning, and reproducibility of scientific research.
He was the PI of the NSF award for the Acquisition of a Data lifecycle Instrument for the Management and
Sharing of Data from instruments and observations (Award # 162552) and the Research Data Management
implementations: Impact on Science (RDMI) (Award #1661523).
Abiodun Adewuya, MBChB, FWACP, FMCPsych, MPH, MD - LASU, Nigeria (co-I): Prof. Adewuya is a
professor of public mental health and consultant in psychiatry research at the Federal Neuropsychiatric Hospital
Yaba, Lagos. He has served as the current provost of the College of Medicine in LASU. He is currently a member
of the governing council of LASU and a member of the board of directors of the College of Medicine in LASU.
3.4 Collaborators – Current PIs of DS-I Africa in Nigeria
Mayowa Owolabi is the PI of the DS-I Africa project called GRASP (Growing Data-science Research in Africa
to Stimulate Progress). GRASP is a capacity building project and the focus is on data science and image analysis
of the brain. He is a Professor of neuroradiology and one of the topmost experts on stroke in Africa. He has
thousands of MRI and CT images. GRASP and DATICAN will benefit from the proposed repository.
Professor Temidayo Ogundiran is the PI of the DS-I Africa Consortium in UI. He is also the dean of UI’s
college of Medicine. He is a clinician with an interest in ethics and legal issues in clinical studies. We will leverage
his experience from his ongoing project on ethical and legal issues on data science studies. He will provide some
training materials on ethical and legal issues, most especially as it relates to Nigeria. He will also provide
guideance when necessary.
10. Conclusion
The NIH-funded capacity building project in Africa is a collaborative project between LASU and two Nigerian
universities (RUN and UI) and with UChicago. The project is funded for 3 years from 2023. Project
implementation started in September 2023 and we have achieved all the deliverables proposed for the first
2 quarters of the first year. While collecting data needed for the training and the use cases, we discovered
that the medical imaging data are unstructured and not in a usable form. We also discovered that there is an
urgent need for computational resources. We hereby request for funds for data curation and the purchase of
computational resources. We strongly believe that both the computational resources and repository will be
useful not only for the member institutions of DATICAN, but for all data scientists and clinicians interested in
using AI and data science technologies to improve healthcare delivery in Africa.
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NIH Spending Category
No NIH Spending Category available.
Project Terms
AbdomenAccreditationAchievementAcuteAfricaAfrica South of the SaharaAfricanAfrican WomenAfrican ancestryAlgorithmsAmericanAnatomyApplications GrantsAppointmentArtificial IntelligenceAwardBackBiomedical ResearchBoard CertificationBody partBrainBrain IschemiaBrain MappingBrain NeoplasmsBrain hemorrhageBrain imagingBreastBreast Cancer Early DetectionBreast Cancer ModelBritishBudgetsCancer BiologyCancer DetectionCancer PatientCaringCase StudyChairpersonChargeChicagoClassificationClimateClinicalClinical ResearchCollaborationsCommunicable DiseasesCommunicationComputer ModelsComputer Vision SystemsCountryCowpoxDataData AnalysesData CollectionData EngineeringData ScienceData ScientistData SecurityData SetData Storage and RetrievalDedicationsDementiaDentalDental cariesDetectionDevelopmentDiagnosisDiagnosticDigital biomarkerDiseaseDoctor of PhilosophyEarly DiagnosisEarly InterventionEarly treatmentEducationEducational process of instructingEducational workshopEthical IssuesEthicsEvaluationFAIR principlesFacultyFederal GovernmentFeedbackFosteringFoundationsFundingFutureGenerationsGeneticGenomicsGrantHead and Neck CancerHealthHealth Insurance Portability and Accountability ActHealthcareHematologistHematologyHigh Performance ComputingHigh School StudentHospitalsHuman GeneticsHuman ResourcesImageImage AnalysisImaging TechniquesIndividualInformation TechnologyInfrastructureInstitutionInstitutional Review BoardsInternationalInterventional ImagingItalyJointsJournalsKnowledgeLabelLaboratoriesLeadershipLearningLegalLettersLibrariesLife Cycle StagesLife StyleLiverLocationLungMachine LearningMagnetic Resonance ImagingMalignant Breast NeoplasmMalignant neoplasm of cervix uteriMalignant neoplasm of lungMalignant neoplasm of prostateMammographyMathematicsMeasurableMedicalMedical ImagingMedicineMental HealthMentored Clinical Scientist Development ProgramMentorsMethodsModalityModelingMolecular BiologyMonitorMultimodal ImagingNamesNatureNeuropsychologyNigeriaNigerianOncologistOncologyOrganPaperParticipantPatient CarePatientsPeer ReviewPersonsPhysiciansPhysicsPneumoniaPoliciesPositioning AttributePostdoctoral FellowPreventionPrincipal InvestigatorPrivacyProcessProtocols documentationPsychiatryPublishingPythonsRadiology SpecialtyReproducibilityResearchResearch PersonnelResidenciesResolutionResource-limited settingResourcesRetrievalRoentgen RaysRunningSamplingScienceScientistSecureServicesSeveritiesSickle Cell AnemiaSiteSkin CancerSocietiesSortingStrokeStructureStudentsSupervisionSystemSystems BiologyTeaching HospitalsTeaching MaterialsTechniquesTechnologyTensorFlowTherapeuticThoracic RadiographyTimeTooth structureTrainers TrainingTrainingTraining ProgramsTraumatic Brain InjuryTuberculosisUltrasonographyUnited States National Institutes of HealthUniversitiesVisitWomanWorkWritingX-Ray Computed TomographyX-Ray Medical Imagingantimicrobialbiomedical imagingbrain magnetic resonance imagingcancer classificationcareerclinical imagingcollegecomputational platformcomputer programcomputer sciencecomputerized data processingcomputing resourcesconvolutional neural networkdata anonymizationdata centersdata cleaningdata curationdata de-identificationdata integrationdata managementdata pipelinedata repositorydata sharingdata visualizationdeep learningdeep learning modeldeep neural networkdesigndetection platformdigital pathologydoctoral studentearly-career facultyexperiencegenerative adversarial networkglobal healthhackathonhealth care deliveryhealth datahigh riskimage archival systemimaging approachimaging modalityimprovedinstrumentinterestlecturerlife spanmachine learning modelmalignant mouth neoplasmmeetingsmembermultidisciplinaryneuropsychiatrynext generationopen dataparent projectpathology imagingpoint of careprecision oncologypredictive modelingprofessorprogramsradiologistrecruitrepositorysenior facultyshot learningskill acquisitionskillssoftware developmentstatisticsstudent trainingtimelinetransfer learningtumorultrasoundunstructured datausabilityvirtual
National Institute of Biomedical Imaging and Bioengineering
CFDA Code
310
DUNS Number
561221217
UEI
CAJRH4ZSKEA9
Project Start Date
20-September-2023
Project End Date
31-August-2026
Budget Start Date
12-September-2024
Budget End Date
31-August-2025
Project Funding Information for 2024
Total Funding
$71,879
Direct Costs
$69,073
Indirect Costs
$2,806
Year
Funding IC
FY Total Cost by IC
2024
NIH Office of the Director
$71,879
Year
Funding IC
FY Total Cost by IC
Sub Projects
No Sub Projects information available for 3UE5EB035490-02S1
Publications
Publications are associated with projects, but cannot be identified with any particular year of the project or fiscal year of funding. This is due to the continuous and cumulative nature of knowledge generation across the life of a project and the sometimes long and variable publishing timeline. Similarly, for multi-component projects, publications are associated with the parent core project and not with individual sub-projects.
No Publications available for 3UE5EB035490-02S1
Patents
No Patents information available for 3UE5EB035490-02S1
Outcomes
The Project Outcomes shown here are displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed are those of the PI and do not necessarily reflect the views of the National Institutes of Health. NIH has not endorsed the content below.
No Outcomes available for 3UE5EB035490-02S1
Clinical Studies
No Clinical Studies information available for 3UE5EB035490-02S1
News and More
Related News Releases
No news release information available for 3UE5EB035490-02S1
History
No Historical information available for 3UE5EB035490-02S1
Similar Projects
No Similar Projects information available for 3UE5EB035490-02S1