ABSTRACT
The Genomics Core of the U19 will provide state-of-the-art transcriptomics, small transcriptomics and exosome
transcriptomics analysis support for organ and cell systems investigated in the three projects: brain (Project 1);
heart (Project 2); and liver and skeletal muscle (Project 3). All methodologies and analysis tools proposed for
the Core are routinely used and well-established. Specifically, the Genomics Core will provide the following
analyses:
RNA Analysis: Transcriptomic studies and analyses of coding RNAs and long noncoding RNAs (lncRNA) will
be performed on tissues and cells specific to each project.
microRNA Analysis: microRNAs (miRNAs) and other small regulatory RNAs will be isolated from tissues and
cells from the three projects. In addition, exosome analysis will be used to determine whether circulating
exosome microRNAs (miRNAs) correlate with changes observed in target tissues and cells in the three
Projects.
The Genomics Core will also provide integrated analysis of results to establish the role of transcript variation,
including coding and non-coding RNAs, in normal aging (normal life course, NLC), aging in intrauterine growth
restricted offspring (IUGR) and offspring of maternal obesity during pregnancy (MO) in baboon tissues or cells
for each Project, as well as for tissues and cells in corticol replacement intervention (CRI) baboons. The Core
will also assist the Projects in identifying coordinated molecular networks responsive to aging in these four
animal cohorts, and identify central hubs regulating these networks. Network tools will be used to integrate
multiple datasets (e.g., miRNA and mRNA) into high-dimensional networks as a first step to develop a systems
analysis of the aging nonhuman primate (NHP).
All three projects will use the services of the Genomics Core. Our synergistic approach analyzing samples
using the same method for all three projects allows multiplexing of samples for analysis, minimizing reagent
costs and reducing analysis artifacts. In addition, this approach allows for integration of “omics” data for the all
tissues analyzed, which will provide a first look at the “systems” response to aging in the five baboon cohorts.
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Publications
Publications are associated with projects, but cannot be identified with any particular year of the project or fiscal year of funding. This is due to the continuous and cumulative nature of knowledge generation across the life of a project and the sometimes long and variable publishing timeline. Similarly, for multi-component projects, publications are associated with the parent core project and not with individual sub-projects.
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Patents
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Outcomes
The Project Outcomes shown here are displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed are those of the PI and do not necessarily reflect the views of the National Institutes of Health. NIH has not endorsed the content below.
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Clinical Studies
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History
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