Genomic Sequencing of Aged Nonhuman Primates at ONPRC
Project Number3P51OD011092-63S4
Former Number5P51OD011092-63
Contact PI/Project LeaderBARR-GILLESPIE, PETER GORDON
Awardee OrganizationOREGON HEALTH & SCIENCE UNIVERSITY
Description
Abstract Text
PROJECT SUMMARY
The Oregon National Primate Research Center (ONPRC) is one of seven such National Primate Research
Centers (NPRCs) that are sponsored by the National Institutes of Health. ONPRC is tasked to conduct scientific
discovery in order to help the public live healthier, longer lives. Facilitating this process, support for ONPRC
comes through the P51 Core Grant (P51-OD011092), which provides expertise, technology, and various Core-
based resources. This infrastructure at ONPRC provides access to nonhuman primates (ca. 5,000 individuals),
enabling a highly translational model for cutting-edge biomedical research.
The genetics department at ONPRC is one of several specialized resources and they help facilitate and maintain
the outbred resource locally and in coordination with the other NPRCs. Moreover, to better define individuals
and their genotypic variation (for example, single nucleotide polymorphisms; SNP) the genetics staff has been
performing DNAseq and compiling this information. Moreover, ONPRC is hosting similar information from other
NPRCs and this data is available in an on-line format. However, due to cost and time-constraints, not to mention
the large number of animals here and other NPRCs, the choice of animals to have their DNA sequenced is
restrictive. Therefore, it is extremely helpful that the NIA is providing support via this project, to sequence the
DNA from animals in the Primate Aging Study. This effort is interesting in other respects, such as an extended
impact of having data from animals that may be well-represented in off-spring currently in the colony, which were
produced over the reproductive lifespan of these individuals.
Public Health Relevance Statement
PROJECT NARRATIVE
Understanding the genetic underpinnings for rhesus macaques will lead to the discovery of polymorphisms that
cause phenotypic variation, including some disease processes. The process of applying DNAseq in this
species is well-established, with local expertise representing the cutting edge in this field. Therefore, this
research should be conducted here on aged animals to add another facet to the expanding database in this
species.
NIH Spending Category
Aging Genetics Human Genome
Project Terms
AgingAnimalsBiomedical ResearchCore GrantDNADNA SequenceDNA sequencingDataDatabasesDiseaseGeneticGenetic PolymorphismGenomicsGenotypeIndividualInfrastructureLibrariesLinkLongevityMacacaMacaca mulattaMapsOregonPhenotypePrimatesProcessProtocols documentationResearchResourcesRunningSamplingSequence Read ArchiveSingle Nucleotide PolymorphismTechnologyTimeUnited States National Institutes of HealthVariantX ChromosomeY Chromosomeagedanimal databasecostformycin triphosphategenetic pedigreeinstrumentationnonhuman primateoffspringpublic databasereference genomereproductivesextranslational model
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Publications
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