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21 Projects
Fiscal Year: 2023Exclude Subprojects: YesProject Number/Application ID: 10555318, 10563214, 10572305, 10576307, 10595048, 10631186, 10655473, 10657366, 10657420, 10661834, 10668953, 10670162, 10675823, 10678947, 10683274, 10736401, 10772507, 10777673, 10793082, 10832934, 10842040

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TActProjectYearSubPrincipal Investigator(s)/ Project Leader(s)OrganizationFiscal YearAdmin ICFunding ICFY Total Cost by ICSimilar Projects
Computational methods for variant calling and haplotyping using long-read sequencing technologies
5TfR01ActfHG010759Projectf04Yearf
BANSAL, VIKAS Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CALIFORNIA, SAN DIEGO2023NHGRI
NHGRI
$380,962
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Representing structural haplotypes and complex genetic variation in pan-genome graphs
3TfU01ActfHG010973Projectf03S1Yearf
CHAISSON, MARK Principal Investigator(s)/ Project Leader(s)
EICHLER, EVAN Principal Investigator(s)/ Project Leader(s)
MARSCHALL, TOBIAS Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF SOUTHERN CALIFORNIA2023NHGRI
NHGRI
$267,573
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Robust and cost-effective computational methods for haplotype-resolved genome assemblies
1TfK99ActfHG012798Projectf01Yearf
CHENG, HAOYU Principal Investigator(s)/ Project Leader(s)
DANA-FARBER CANCER INST2023NHGRI
NHGRI
$122,262
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HMMER and Infernal: Finding distant homologs of sequences and RNA structures
5TfR01ActfHG009116Projectf07Yearf
EDDY, SEAN R Principal Investigator(s)/ Project Leader(s)
HARVARD UNIVERSITY2023NHGRI
NHGRI
$533,450
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Long-read sequence and assembly of segmental duplications
5TfR01ActfHG002385Projectf22Yearf
EICHLER, EVAN Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF WASHINGTON2023NHGRI
NHGRI
$635,435
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Novel Use of Genome Information to Understand Mutations
5TfR01ActfHG012117Projectf03Yearf
JERNIGAN, ROBERT L Principal Investigator(s)/ Project Leader(s)
KLOCZKOWSKI, ANDRZEJ Principal Investigator(s)/ Project Leader(s)
IOWA STATE UNIVERSITY2023NHGRI
NHGRI
$465,001
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K-mer indexing for pan-genome reference annotation
3TfU01ActfHG010963Projectf03S1Yearf
JI, HANLEE P Principal Investigator(s)/ Project Leader(s)
WEISSMAN, TSACHY Principal Investigator(s)/ Project Leader(s)
STANFORD UNIVERSITY2023NHGRI
NHGRI
$300,000
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Improved genomic sketching for MUMmer and metagenomics
5TfR01ActfHG012470Projectf02Yearf
KINGSFORD, CARLETON LEE Principal Investigator(s)/ Project Leader(s)
MARÇAIS, GUILLAUME Principal Investigator(s)/ Project Leader(s)
CARNEGIE-MELLON UNIVERSITY2023NHGRI
NHGRI
$417,930
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Personal and panel references for improved alignment
5TfR01ActfHG011392Projectf04Yearf
LANGMEAD, BENJAMIN THOMAS Principal Investigator(s)/ Project Leader(s)
JOHNS HOPKINS UNIVERSITY2023NHGRI
NHGRI
$366,893
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Omics information maximization in single-cell sequencing with hybrid molecular and computational approaches
5TfR35ActfHG011292Projectf04Yearf
LAU, BILLY TSZ CHEONG Principal Investigator(s)/ Project Leader(s)
STANFORD UNIVERSITY2023NHGRI
NHGRI
$471,022
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The construction and utility of reference pan-genome graphs
3TfU01ActfHG010961Projectf03S1Yearf
LI, HENG Principal Investigator(s)/ Project Leader(s)
PATEN, BENEDICT Principal Investigator(s)/ Project Leader(s)
DANA-FARBER CANCER INST2023NHGRI
NHGRI
$801,988
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Computational Methods for Next-Generation Comparative Genomics
5TfR01ActfHG007352Projectf09Yearf
MA, JIAN Principal Investigator(s)/ Project Leader(s)
CARNEGIE-MELLON UNIVERSITY2023NHGRI
NHGRI
$366,316
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Enabling Comparative Pangenomics
5TfR01ActfHG010485Projectf04Yearf
PATEN, BENEDICT Principal Investigator(s)/ Project Leader(s)
HAUSSLER, DAVID H Principal Investigator(s)/ Project Leader(s)
MARTIN, FERGAL JAMES Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CALIFORNIA SANTA CRUZ2023NHGRI
NHGRI
$647,740
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Specialized Tools and Auto-updatable Scalable Interactive Databases to Study isomiRs, tRFs and rRFs in Human and Mouse
1TfR01ActfHG012784Projectf01A1Yearf
RIGOUTSOS, ISIDORE Principal Investigator(s)/ Project Leader(s)
THOMAS JEFFERSON UNIVERSITY2023NHGRI
NHGRI
$553,060
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Computational Methods for Genome Assembly, Transcript Assembly, and Gene Discovery
5TfR01ActfHG006677Projectf22Yearf
SALZBERG, STEVEN L. Principal Investigator(s)/ Project Leader(s)
JOHNS HOPKINS UNIVERSITY2023NHGRI
NHGRI
$722,984
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Novel methods for large-scale genomic interval comparison
3TfR01ActfHG012558Projectf02S1Yearf
SHEFFIELD, NATHAN Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF VIRGINIA2023NHGRI
OD
$314,711
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Novel methods for large-scale genomic interval comparison
5TfR01ActfHG012558Projectf02Yearf
SHEFFIELD, NATHAN Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF VIRGINIA2023NHGRI
NHGRI
$383,973
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Development and Maintenance of RepeatMasker and RepeatModeler
5TfR01ActfHG002939Projectf17Yearf
SMIT, ARIAN FREDERICUS ANTHONIUS Principal Investigator(s)/ Project Leader(s)
HUBLEY, ROBERT MACDONALD Principal Investigator(s)/ Project Leader(s)
WHEELER, TRAVIS JOHN Principal Investigator(s)/ Project Leader(s)
INSTITUTE FOR SYSTEMS BIOLOGY2023NHGRI
NHGRI
$588,173
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Novel methods to detect and interpret splicing quantitative trait loci
3TfR01ActfHG011067Projectf04S1Yearf
STALEY, JONATHAN P Principal Investigator(s)/ Project Leader(s)
LI, YANG Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CHICAGO2023NHGRI
NHGRI
$120,040
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A compendium of complete primate reference genomes to facilitate conservation, genomics, and ecology
1TfR01ActfHG013017Projectf01Yearf
SUDMANT, PETER HESHEDAHL Principal Investigator(s)/ Project Leader(s)
GARRISON, ERIK Principal Investigator(s)/ Project Leader(s)
MITCHELL, MATTHEW WILLIAM Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CALIFORNIA BERKELEY2023NHGRI
NHGRI
$550,000
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Nanopore based profiling of epigenetic state
5TfR01ActfHG009190Projectf07Yearf
TIMP, WINSTON GEORGE Principal Investigator(s)/ Project Leader(s)
JOHNS HOPKINS UNIVERSITY2023NHGRI
NHGRI
$624,009
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