Coordination Center for Open Collaboration in Systems Biology
Project Number5U24CA209923-04
Contact PI/Project LeaderGUINNEY, JUSTIN
Awardee OrganizationSAGE BIONETWORKS
Description
Abstract Text
Abstract
As a non-profit research institution, Sage Bionetworks is driven by the impact that our science can create,
either directly, or with collaborators. We have created open bioinformatics and data resources as part of every
large-scale research project in which we have participated, covering a diverse set of projects involving clinical,
imaging, `omics, and mobile sensor data related to research in oncology. Over the past 4 years, we have
developed Synapse, an informatics platform for hosting scientific data, code, and knowledge, and have
established an outstanding track record of effective interactions that engage large scale research consortia.
We have tested the Synapse platform by supporting research efforts that required dozens to hundreds of
scientists to share data, analysis code, and results in real time. This platform, and the activities of Sage's data
scientists and curators, form the basis for the Resource Coordinating Hub. These efforts provide a model for
our interactions with the other CSBC and PS-ON centers in the Collaboration and Pilot Project Hub. One of
our most successful strategies for forming and engaging research communities has been to organize and run
crowdsourced competitions called DREAM Challenges will form the core of the Outreach Hub.
Public Health Relevance Statement
Narrative
Sage Bionetworks has created open bioinformatics and data resources as part of every large-scale research
project in which we have participated, covering a diverse set of projects involving clinical, imaging, `omics, and
mobile sensor data related to research in oncology. Though supporting these projects, we have developed the
Synapse informatics platform for hosting scientific data, code, and knowledge; we have established an
outstanding track record of effective interactions that engage large scale research consortia; we have led the
development of over a dozen community challenges as part of the DREAM program to engage a diverse
scientific audience. We will apply these experiences as an engaged Coordinating Center for the CSBC and
PS-ON programs.
No Sub Projects information available for 5U24CA209923-04
Publications
Publications are associated with projects, but cannot be identified with any particular year of the project or fiscal year of funding. This is due to the continuous and cumulative nature of knowledge generation across the life of a project and the sometimes long and variable publishing timeline. Similarly, for multi-component projects, publications are associated with the parent core project and not with individual sub-projects.
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Patents
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Outcomes
The Project Outcomes shown here are displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed are those of the PI and do not necessarily reflect the views of the National Institutes of Health. NIH has not endorsed the content below.
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Clinical Studies
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News and More
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History
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Similar Projects
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