Using natural killer cells to prevent breast cancer metastases
Project Number5K08CA270188-02
Former Number1K08CA270188-01
Contact PI/Project LeaderCHAN, ISAAC
Awardee OrganizationUT SOUTHWESTERN MEDICAL CENTER
Description
Abstract Text
Project Summary/Abstract
Most of breast cancer related mortality is related to metastatic disease. While NK cells play an essential role in
the control of metastatic breast cancer we do not fully understand key mechanistic and temporal events of NK
cell immunosurveillance. To address this need, I created novel 3D co-culture assays of NK cells and invasive
breast cancer organoids and cell clusters. Using these models I demonstrated NK cells limit breast cancer
metastasis through induction of apoptosis in invasive breast cancer cells. We discovered micrometastatic
cancer cells reprogram NK cells to promote metastatic outgrowth. Using bulk RNA-seq, we identified KLRG1
as a key expressed gene by teNK cells. Blocking KLRG1 restores anti-metastatic activity. teNK cells also
express high levels of DNA methyltransferases (DNMTs). Inhibition of DNMTs in teNK cells achieves anti-
metastatic results. Combination KLRG1 blockade and DNMT inhibition further reduces tumor growth.
Building on these exciting data, we hypothesize: 1) reprogrammed teNK cell KLRG1 expression is
regulated by DNMTs and targeting both in combination will reverse NK cell reprogramming; 2) reprogrammed
human NK cells increase human breast cancer metastasis and blocking prioritized NK cell inhibitory receptors
restores the cytotoxic activity of metastases-reprogrammed human NK cells.
Aim 1 will determine how blocking DNMTs and KLRG1 synergistically reverses NK cell reprogramming.
We have observed blocking KLRG1 and DNMTs together in teNK cells synergistically reduces colony
formation. We will first test these ex vivo findings in in vivo models of metastasis. Next, we will determine the
link between NK cell reprogramming and DNMTs using novel functional ex vivo and in vivo models of
metastasis using CRISPR-Cas9 molecular tools.
Aim 2 will determine the function of metastases-reprogrammed NK cells in human breast cancer. First,
we showed that human NK cells can be reprogrammed in culture to actively promote metastatic outgrowth. We
will leverage preliminary transcriptomic analysis of reprogrammed NK cells to identify markers of metastases-
reprogrammed NK cells. We will apply these tools to FFPE sections of patients with metastatic breast cancer
to define the abundance of reprogrammed NK cells. Together with patient samples, single-cell RNA-seq, and
ex vivo and in vivo models that capture the progression from anti-metastatic NK cells to metastases-promoting
NK cells, we will further characterize the function and molecular profile of reprogrammed NK cells in human
breast cancer. Finally, using a preliminary list of targets, we will test effective individual or combination
treatments that can restore human NK cell cytotoxicity against metastatic breast cancer cells.
Impact: Completing these aims will deepen our fundamental understanding of NK cell biology and have
the potential to bring new NK cell directed immunotherapies to our patients.
Public Health Relevance Statement
Project Narrative
I discovered that invasive breast cancer cells can reprogram natural killer (NK) cells into being metastasis-
promoters. I propose to determine the mechanisms driving metastases-reprogrammed NK cells and to
determine its significance in human breast cancer. NK cell directed therapies could provide alternative
immunotherapies for metastatic breast cancer patients and I will complete key preclinical experiments needed
to translate these insights to patient benefit.
NIH Spending Category
No NIH Spending Category available.
Project Terms
3-DimensionalAddressAdvisory CommitteesAntibodiesAutomobile DrivingBehaviorBioinformaticsBiological AssayBiometryBreast Cancer CellBreast Cancer PatientBreast Cancer PreventionBreast Cancer therapyCRISPR/Cas technologyCell CommunicationCell ReprogrammingCell Surface ReceptorsCellsCellular biologyCoculture TechniquesCombined Modality TherapyDNA Modification MethylasesDNA methyltransferase inhibitionDataDiseaseDisseminated Malignant NeoplasmEnvironmentEventExtracellular MatrixFOSL1 geneFrequenciesFundingGenesGenetic TranscriptionHumanImmuneImmunologic SurveillanceImmunotherapyIn SituIndividualInduction of ApoptosisKiller CellsKnowledgeLectinLigandsLinkMalignant Breast NeoplasmMentorsMetastatic breast cancerModelingMolecularMolecular ProfilingNatural Killer CellsNeoplasm MetastasisOrganOrganoidsPatientsPhenotypePhysiciansPlayPostdoctoral FellowRoleSamplingScientistSignal TransductionSiteTechniquesTestingTherapeuticTimeTissuesTranslatingbiomarker identificationbreast cancer metastasiscancer cellcytotoxiccytotoxicitydifferential expressioneffective therapyexperimental studyimprovedin vivoin vivo Modelinhibitorinsightkiller factorlive cell imagingmortalitymouse modelneoplastic cellnovelpharmacologicpre-clinicalprogramspromoterreceptorrestraintsingle-cell RNA sequencingsuccesstherapeutic targettooltranscription factortranscriptome sequencingtranscriptomicstumortumor growthtumor microenvironment
No Sub Projects information available for 5K08CA270188-02
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The Project Outcomes shown here are displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed are those of the PI and do not necessarily reflect the views of the National Institutes of Health. NIH has not endorsed the content below.
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