Genetic dependencies in KIAA1549-BRAF rearranged pediatric low-grade gliomas
Project Number1K99CA290163-01A1
Former Number1K99CA290163-01
Contact PI/Project LeaderMISEK, SEAN ALEXANDER
Awardee OrganizationBROAD INSTITUTE, INC.
Description
Abstract Text
Project Summary:
Pediatric low-grade gliomas (pLGGs) typically harbor only a single oncogenic driver mutation. In most tumors
this driver mutation is a fusion between the N-terminus of KIAA1549 and the C-terminus of BRAF. Many patients
with these driver mutations respond to BRAF inhibitors, but several challenges remain in extending clinical
benefit to all patients. One challenge is that there is often severe toxicity associated with these treatments which
necessitates cessation of treatment. These clinical observations highlight a clear need to develop new
therapeutic strategies to treat pLGG.
We identified the two core members of the POMT complex (POMT1 and POMT2) as being selectively essential
for the survival of KIAA1549:BRAF-dependent cells. The POMT complex is necessary for O-mannosylation of
secreted and transmembrane proteins, which is striking because KIAA1549 is reported to be highly
mannosylated. It was originally hypothesized that the KIAA1549:BRAF fusion activates BRAF by truncating its
N-terminal negative regulatory domains, but my preliminary data suggests that the KIAA1549 portion of the
fusion is also necessary for activating BRAF.
The primary goals of this proposal are to more broadly understand how the KIAA1549:BRAF fusion is activated,
and to understand why the POMT complex is a selective dependency in KIAA1549:BRAF-dependent cells. In
Aim 1 I will test the hypothesis that POMT enzymatic activity is necessary for the survival of KIAA1549:BRAF
rearranged pLGG. In Aim 2 I will test the hypothesis that O-mannosylation of KIAA1549:BRAF is necessary for
oncogenic signaling. And in Aim 3 I will test the hypothesis that cleavage of KIAA1549:BRAF by Furin is
necessary for RAF activation.
During this proposal I will also engage in a range of activities designed to enhance my scientific training. I will
attend and present at multiple national and international conferences and will participate in retreats and
networking events with other pediatric oncology groups. My ultimate career goal is to establish my own
independent research laboratory focused on pediatric neurooncology. The training I receive through this
fellowship is a necessary step towards this goal.
Public Health Relevance Statement
Project Narrative
The most frequent genomic alteration in pediatric low-grade gliomas is a rearrangement that creates a fusion
between the oncogene BRAF and the uncharacterized protein KIAA1549. Inhibitors which block the function of
this fusion are effective but cause significant toxicity and require continuous dosing throughout childhood. The
goal of this project is to define new therapeutic targets in KIAA1549-BRAF mutant pLGGs, with a focus on
characterizing how the POMT complex regulates KIAA1549-BRAF activity.
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