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61 Projects
Fiscal Year: 2023Exclude Subprojects: YesProject Number/Application ID: 10544726, 10557153, 10561641, 10572951, 10574510, 10576268, 10576796, 10579942, 10582852, 10584152, 10584999, 10585180, 10586956, 10595104, 10610872, 10610875, 10621786, 10623221, 10626068, 10627894, 10627971, 10630086, 10630157, 10630218, 10630265, 10630307, 10633166, 10641907, 10646125, 10646167, 10647775, 10652921, 10653221, 10656792, 10657670, 10658562, 10659170, 10659175, 10660800, 10662188, 10665606, 10665666, 10665735, 10667502, 10669089, 10670968, 10675239, 10676738, 10686008, 10686879, 10694909, 10709480, 10709562, 10716241, 10731582, 10735033, 10759476, 10818088, 10841906, 10889297, 10653197

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TActProjectYearSubPrincipal Investigator(s)/ Project Leader(s)OrganizationFiscal YearAdmin ICFunding ICFY Total Cost by ICSimilar Projects
Design, prediction, and prioritization of systematic perturbations of the human genome
5TfU01ActfHG011967Projectf03Yearf
ALLEN, ANDREW S Principal Investigator(s)/ Project Leader(s)
MAJOROS, WILLIAM Principal Investigator(s)/ Project Leader(s)
MUKHERJEE, SHAYAN Principal Investigator(s)/ Project Leader(s)
PAGE, CHARLES DAVID Principal Investigator(s)/ Project Leader(s)
DUKE UNIVERSITY2023NHGRI
NHGRI
$729,808
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Sequence-based Machine Learning for Inference of Dynamic Cell State Gene Network Models
5TfR01ActfHG012367Projectf02Yearf
BEER, MICHAEL A Principal Investigator(s)/ Project Leader(s)
JOHNS HOPKINS UNIVERSITY2023NHGRI
NHGRI
$463,906
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Administrative Supplement: The Clinical Genome Resource - Advancing genomic medicine through biocuration and expert assessment of genes and variants at scale
3TfU24ActfHG009650Projectf07S1Yearf
BERG, JONATHAN S Principal Investigator(s)/ Project Leader(s)
UNIV OF NORTH CAROLINA CHAPEL HILL2023NHGRI
NHGRI
$399,387
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The Clinical Genome Resource – Advancing genomic medicine through biocuration and expert assessment of genes and variants at scale
5TfU24ActfHG009650Projectf07Yearf
BERG, JONATHAN S Principal Investigator(s)/ Project Leader(s)
UNIV OF NORTH CAROLINA CHAPEL HILL2023NHGRI
NHGRI
$4,807,971
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Predicting the Impact of Genomic Variation on Cellular States
5TfU01ActfHG011952Projectf03Yearf
BOYLE, ALAN P Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF MICHIGAN AT ANN ARBOR2023NHGRI
NHGRI
$710,899
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Perturbation-response approaches to determining the regulatory networks underlying human complex traits
5TfK99ActfHG012373Projectf02Yearf
BROWN, BRIELIN Principal Investigator(s)/ Project Leader(s)
NEW YORK GENOME CENTER2023NHGRI
NHGRI
$115,020
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Identity by descent in population data
5TfR01ActfHG005701Projectf10Yearf
BROWNING, SHARON Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF WASHINGTON2023NHGRI
NHGRI
$434,951
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The impact of genomic variation on environment-induced changes in pancreatic beta cell states
5TfU01ActfHG012059Projectf03Yearf
CARTER, HANNAH KATHRYN Principal Investigator(s)/ Project Leader(s)
GAULTON, KYLE JEFFRIE Principal Investigator(s)/ Project Leader(s)
REN, BING Principal Investigator(s)/ Project Leader(s)
SANDER, MAIKE Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CALIFORNIA, SAN DIEGO2023NHGRI
NHGRI
$1,280,000
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Integrative computational-experimental approaches to stratify monogenic disease risk
1TfR56ActfHG012681Projectf01A1Yearf
CASSA, CHRISTOPHER Principal Investigator(s)/ Project Leader(s)
SHERWOOD, RICHARD I Principal Investigator(s)/ Project Leader(s)
BRIGHAM AND WOMEN'S HOSPITAL2023NHGRI
NHGRI
$300,000
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Robust Methods for Polygenic Analysis to Inform Disease Etiology and Enhance Risk Prediction
5TfR01ActfHG010480Projectf05Yearf
CHATTERJEE, NILANJAN Principal Investigator(s)/ Project Leader(s)
JOHNS HOPKINS UNIVERSITY2023NHGRI
NHGRI
$575,302
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A genome-wide genealogical framework for statistical and population genetic analysis
1TfR01ActfHG012605Projectf01A1Yearf
CHIANG, CHARLESTON Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF SOUTHERN CALIFORNIA2023NHGRI
NHGRI
$562,081
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Linking Variants to Multi-scale Phenotypes via a Synthesis of Subnetwork Inference and Deep Learning
5TfU01ActfHG012039Projectf03Yearf
CRAVEN, MARK W. Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF WISCONSIN-MADISON2023NHGRI
NHGRI
$655,577
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Genomic discovery and prediction for quantitative traits with complex genetic mechanisms
5TfR01ActfHG012425Projectf02Yearf
DA, YANG Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF MINNESOTA2023NHGRI
NHGRI
$246,187
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Revealing new short tandem repeat variation in the human population across sequencing technologies: towards rare disease diagnosis and discovery
1TfK99ActfHG012796Projectf01Yearf
DASHNOW, HARRIET Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF UTAH2023NHGRI
NHGRI
$185,400
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Sequence resolution of complex human genome structural variation
2TfR01ActfHG010169Projectf05A1Yearf
EICHLER, EVAN Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF WASHINGTON2023NHGRI
NHGRI
$440,968
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Advancing Multi-Omics and Electronic Health Records Computational Methodologies
5TfR01ActfHG011138Projectf04Yearf
GAMAZON, ERIC R Principal Investigator(s)/ Project Leader(s)
VANDERBILT UNIVERSITY MEDICAL CENTER2023NHGRI
NHGRI
$302,750
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Improving Methods and Practices for Trans-Ethnic Genetic Studies
1TfR01ActfHG012354Projectf01A1Yearf
GE, TIAN Principal Investigator(s)/ Project Leader(s)
MASSACHUSETTS GENERAL HOSPITAL2023NHGRI
NHGRI
$458,804
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Refining Mendelian disease analysis via detection of clinically relevant repeat variants
2TfR01ActfHG010149Projectf05Yearf
GYMREK, MELISSA Principal Investigator(s)/ Project Leader(s)
BAFNA, VINEET Principal Investigator(s)/ Project Leader(s)
BANSAL, VIKAS Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CALIFORNIA, SAN DIEGO2023NHGRI
NHGRI
$569,759
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Refining mutation rates and measures of purifying selection with an application to understanding the impact of non-coding variation on neuropsychiatric diseases
5TfR01ActfHG010773Projectf04Yearf
HE, XIN Principal Investigator(s)/ Project Leader(s)
NOVEMBRE, JOHN Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CHICAGO2023NHGRI
NHGRI
$436,691
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Genomic control of gene regulatory networks governing early human lineage decisions
5TfU01ActfHG012051Projectf03Yearf
HUANGFU, DANWEI Principal Investigator(s)/ Project Leader(s)
BEER, MICHAEL A Principal Investigator(s)/ Project Leader(s)
HADJANTONAKIS, ANNA-KATERINA Principal Investigator(s)/ Project Leader(s)
SLOAN-KETTERING INST CAN RESEARCH2023NHGRI
NHGRI
$1,330,000
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High dimensional statistical data modeling and integration for studying regulatory variation
5TfR01ActfHG003747Projectf14Yearf
KELES, SUNDUZ Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF WISCONSIN-MADISON2023NHGRI
NHGRI
$378,760
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Deep learning for population genetics
5TfR01ActfHG010774Projectf04Yearf
KERN, ANDREW D Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF OREGON2023NHGRI
NHGRI
$420,389
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A unified quantitative modeling strategy for multiplex assays of variant effect
5TfR01ActfHG011787Projectf02Yearf
KINNEY, JUSTIN B. Principal Investigator(s)/ Project Leader(s)
COLD SPRING HARBOR LABORATORY2023NHGRI
NHGRI
$805,485
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Predicting context-specific molecular and phenotypic effects of genetic variation through the lens of the cis-regulatory code
5TfU01ActfHG012069Projectf03Yearf
KUNDAJE, ANSHUL Principal Investigator(s)/ Project Leader(s)
STANFORD UNIVERSITY2023NHGRI
NHGRI
$727,363
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Mining Thousands of Genomes to Classify Somatic and Pathogenic Structural Variants
5TfR01ActfHG011774Projectf02Yearf
LAYER, RYAN M Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF COLORADO2023NHGRI
NHGRI
$573,131
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An ensemble framework for regulatory variant prediction.
1TfR01ActfHG012871Projectf01Yearf
LEE, DONGWON Principal Investigator(s)/ Project Leader(s)
BOSTON CHILDREN'S HOSPITAL2023NHGRI
NHGRI
$471,602
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Deciphering the Genomics of Gene Network Regulation of T Cell and Fibroblast States in Autoimmune Inflammation
5TfU01ActfHG012103Projectf03Yearf
LESLIE, CHRISTINA S Principal Investigator(s)/ Project Leader(s)
RUDENSKY, ALEXANDER Y Principal Investigator(s)/ Project Leader(s)
SLOAN-KETTERING INST CAN RESEARCH2023NHGRI
NHGRI
$1,280,000
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Integrative genomic and geospatial analysis of insurance claim, biobank and GWAS summary statistics for complex traits
1TfR01ActfES036042Projectf01A1Yearf
LIU, DAJIANG Principal Investigator(s)/ Project Leader(s)
JIANG, BIBO Principal Investigator(s)/ Project Leader(s)
PENNSYLVANIA STATE UNIV HERSHEY MED CTR2023NIEHS
NIEHS
$288,010
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Leveraging genetic variation to dissect gene regulatory networks of reprogramming to pluripotency
5TfU01ActfHG012079Projectf03Yearf
LUO, CHONGYUAN Principal Investigator(s)/ Project Leader(s)
PLATH, KATHRIN Principal Investigator(s)/ Project Leader(s)
ZAITLEN, NOAH A Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CALIFORNIA LOS ANGELES2023NHGRI
NHGRI
$1,351,290
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Characterizing the evolutionary architecture of complex disease within and across diverse populations
5TfR01ActfHG012133Projectf03Yearf
MANCUSO, NICHOLAS Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF SOUTHERN CALIFORNIA2023NHGRI
NHGRI
$719,204
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Structurally complex genome loci in human populations and human phenotypes
5TfR01ActfHG006855Projectf11Yearf
MCCARROLL, STEVEN ANDREW Principal Investigator(s)/ Project Leader(s)
HARVARD MEDICAL SCHOOL2023NHGRI
NHGRI
$724,685
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Methods for Human Genetic Mapping
5TfR01ActfHG001645Projectf24Yearf
MCPEEK, MARY SARA Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CHICAGO2023NHGRI
NHGRI
$442,976
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Mendelian randomization for modern data: Integrating data resources to improve accuracy of causal estimates.
1TfR01ActfHG013104Projectf01Yearf
MORRISON, JEAN V. Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF MICHIGAN AT ANN ARBOR2023NHGRI
NHGRI
$358,755
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Rapid Evolution of Genomic Architecture and Multi-omics Traits
5TfR35ActfHG010692Projectf05Yearf
O'CONNOR, TIMOTHY DAVID Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF MARYLAND BALTIMORE2023NHGRI
NHGRI
$463,057
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Genetic & Social Determinants of Health: Center for Admixture Science and Technology
7TfRM1ActfHG011558Projectf03Yearf
OHNO-MACHADO, LUCILA Principal Investigator(s)/ Project Leader(s)
FRAZER, KELLY A Principal Investigator(s)/ Project Leader(s)
GYMREK, MELISSA Principal Investigator(s)/ Project Leader(s)
YALE UNIVERSITY2023NHGRI
NHGRI
$1,928,668
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Development and Application of Computational Methods for Single Cell DNA Sequencing Data
5TfR01ActfHG012573Projectf02Yearf
PARK, PETER J Principal Investigator(s)/ Project Leader(s)
HARVARD MEDICAL SCHOOL2023NHGRI
NHGRI
$672,434
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Validating the performance and inclusivity of a novel functionally-informed predictive genetic test method for polygenic disease
1TfR43ActfHG013309Projectf01Yearf
PATWARDHAN, TEJAL Principal Investigator(s)/ Project Leader(s)
MARTINGALE LABS, INC.2023NHGRI
NHGRI
$387,472
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Baylor College of Medicine/Stanford University Clinical Genome Resource (CLINGEN)
5TfU24ActfHG009649Projectf07Yearf
PLON, SHARON E. Principal Investigator(s)/ Project Leader(s)
KLEIN, TERI ELLEN Principal Investigator(s)/ Project Leader(s)
MILOSAVLJEVIC, ALEKSANDAR Principal Investigator(s)/ Project Leader(s)
WRIGHT, MATT WILLIAM Principal Investigator(s)/ Project Leader(s)
BAYLOR COLLEGE OF MEDICINE2023NHGRI
NCI
NHGRI
$500,000
$4,800,978
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Cross-platform structural variant discovery with deep learning
5TfR01ActfHG012467Projectf02Yearf
POPIC, VICTORIA Principal Investigator(s)/ Project Leader(s)
BROAD INSTITUTE, INC.2023NHGRI
NHGRI
$575,926
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Leveraging functional data to predict disease risk in multi-ethnic populations
5TfR01ActfHG006399Projectf12Yearf
PRICE, ALKES L Principal Investigator(s)/ Project Leader(s)
HARVARD SCHOOL OF PUBLIC HEALTH2023NHGRI
NHGRI
$450,000
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Scalable detection and interpretation of structural variation in human genomes
5TfR01ActfHG010757Projectf04Yearf
QUINLAN, AARON R Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF UTAH2023NHGRI
NHGRI
$692,048
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Supporting IGVF by modeling genetics, function, and phenotype with machine learning
5TfU01ActfHG012022Projectf03Yearf
RADIVOJAC, PREDRAG Principal Investigator(s)/ Project Leader(s)
NORTHEASTERN UNIVERSITY2023NHGRI
NHGRI
$635,027
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Predicting the impact of genetic variants, genes and pathways on human Disease
5TfU01ActfHG012009Projectf03Yearf
RAYCHAUDHURI, SOUMYA Principal Investigator(s)/ Project Leader(s)
PRICE, ALKES L Principal Investigator(s)/ Project Leader(s)
SUNYAEV, SHAMIL Principal Investigator(s)/ Project Leader(s)
BRIGHAM AND WOMEN'S HOSPITAL2023NHGRI
NHGRI
$788,939
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Advanced tools for using ancient DNA to study biology and history
5TfR01ActfHG012287Projectf11Yearf
REICH, DAVID E Principal Investigator(s)/ Project Leader(s)
HARVARD MEDICAL SCHOOL2023NHGRI
NHGRI
$431,230
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Multi-scale functional dissection and modeling of regulatory variation associated with human traits
1TfR01ActfHG012872Projectf01Yearf
REILLY, STEVEN K. Principal Investigator(s)/ Project Leader(s)
YALE UNIVERSITY2023NHGRI
NHGRI
$746,416
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EDGE CMT: deleterious recessive variation - from experimental data to predictive models
1TfR01ActfHG013015Projectf01Yearf
ROCKMAN, MATTHEW Principal Investigator(s)/ Project Leader(s)
NEW YORK UNIVERSITY2023NHGRI
NHGRI
$380,886
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Population genetics for large-scale sequencing studies of diverse populations
5TfR01ActfHG005855Projectf12Yearf
ROSENBERG, NOAH Principal Investigator(s)/ Project Leader(s)
SCHEET, PAUL A Principal Investigator(s)/ Project Leader(s)
ZOELLNER, SEBASTIAN Principal Investigator(s)/ Project Leader(s)
STANFORD UNIVERSITY2023NHGRI
NHGRI
$530,211
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Reconstructing mechanisms of somatic variation in diverse cellular lineages
5TfR01ActfHG010589Projectf04Yearf
SCHWARTZ, RUSSELL S Principal Investigator(s)/ Project Leader(s)
CARNEGIE-MELLON UNIVERSITY2023NHGRI
NHGRI
$360,943
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Linking genome variation to transcriptional network dynamics in human B cells
5TfU01ActfHG012041Projectf03Yearf
SINGH, HARINDER Principal Investigator(s)/ Project Leader(s)
DAS, JISHNU Principal Investigator(s)/ Project Leader(s)
SAHNI, NIDHI Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF PITTSBURGH AT PITTSBURGH2023NHGRI
NHGRI
$950,000
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Novel methods to detect and interpret splicing quantitative trait loci
5TfR01ActfHG011067Projectf04Yearf
STALEY, JONATHAN P Principal Investigator(s)/ Project Leader(s)
LI, YANG Principal Investigator(s)/ Project Leader(s)
UNIVERSITY OF CHICAGO2023NHGRI
NHGRI
$653,339
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